Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11500

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11495 and BWI76_RS11500 are separated by 117 nucleotidesBWI76_RS11500 and BWI76_RS11505 are separated by 74 nucleotides BWI76_RS11495: BWI76_RS11495 - hypothetical protein, at 2,420,552 to 2,421,406 _RS11495 BWI76_RS11500: BWI76_RS11500 - D-hexose-6-phosphate mutarotase, at 2,421,524 to 2,422,408 _RS11500 BWI76_RS11505: BWI76_RS11505 - aldehyde dehydrogenase, at 2,422,483 to 2,423,478 _RS11505 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2421.080 kb on - strand, within BWI76_RS11495at 2421.333 kb on + strandat 2421.502 kb on - strandat 2421.502 kb on - strandat 2421.544 kb on + strandat 2421.553 kb on - strandat 2421.881 kb on - strand, within BWI76_RS11500at 2421.982 kb on + strand, within BWI76_RS11500at 2422.022 kb on - strand, within BWI76_RS11500at 2422.106 kb on - strand, within BWI76_RS11500at 2422.263 kb on - strand, within BWI76_RS11500at 2422.362 kb on + strandat 2422.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,421,080 - BWI76_RS11495 0.62 -0.3
2,421,333 + -0.6
2,421,502 - -0.2
2,421,502 - +0.2
2,421,544 + -0.6
2,421,553 - -2.2
2,421,881 - BWI76_RS11500 0.40 +0.4
2,421,982 + BWI76_RS11500 0.52 +1.4
2,422,022 - BWI76_RS11500 0.56 -0.3
2,422,106 - BWI76_RS11500 0.66 +3.6
2,422,263 - BWI76_RS11500 0.84 +0.0
2,422,362 + +0.4
2,422,370 - -0.9

Or see this region's nucleotide sequence