Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10880 and BWI76_RS10885 are separated by 280 nucleotides BWI76_RS10885 and BWI76_RS10890 are separated by 268 nucleotides BWI76_RS10890 and BWI76_RS10895 are separated by 84 nucleotides BWI76_RS10895 and BWI76_RS10900 are separated by 22 nucleotides
BWI76_RS10880: BWI76_RS10880 - LysR family transcriptional regulator, at 2,299,798 to 2,300,703
_RS10880
BWI76_RS10885: BWI76_RS10885 - tRNA-Ser, at 2,300,984 to 2,301,071
_RS10885
BWI76_RS10890: BWI76_RS10890 - glyoxylate/hydroxypyruvate reductase A, at 2,301,340 to 2,302,278
_RS10890
BWI76_RS10895: BWI76_RS10895 - phosphatase, at 2,302,363 to 2,303,100
_RS10895
BWI76_RS10900: BWI76_RS10900 - putative oxidoreductase, at 2,303,123 to 2,303,677
_RS10900
Position (kb)
2301
2302
2303 Strain fitness (log2 ratio)
-2
-1
0
1 at 2301.248 kb on - strand at 2301.335 kb on - strand at 2301.722 kb on + strand, within BWI76_RS10890 at 2302.022 kb on + strand, within BWI76_RS10890 at 2302.254 kb on + strand at 2302.370 kb on + strand at 2302.378 kb on - strand at 2302.393 kb on - strand at 2302.487 kb on - strand, within BWI76_RS10895 at 2302.686 kb on + strand, within BWI76_RS10895 at 2302.718 kb on + strand, within BWI76_RS10895 at 2302.897 kb on + strand, within BWI76_RS10895 at 2302.924 kb on + strand, within BWI76_RS10895 at 2303.027 kb on - strand at 2303.148 kb on - strand at 2303.172 kb on - strand at 2303.210 kb on - strand, within BWI76_RS10900
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,301,248 - +0.6 2,301,335 - -1.2 2,301,722 + BWI76_RS10890 0.41 -1.5 2,302,022 + BWI76_RS10890 0.73 -1.9 2,302,254 + -0.5 2,302,370 + +1.1 2,302,378 - +0.4 2,302,393 - -0.6 2,302,487 - BWI76_RS10895 0.17 +0.1 2,302,686 + BWI76_RS10895 0.44 -0.9 2,302,718 + BWI76_RS10895 0.48 -2.5 2,302,897 + BWI76_RS10895 0.72 -1.5 2,302,924 + BWI76_RS10895 0.76 +0.0 2,303,027 - +0.3 2,303,148 - +0.1 2,303,172 - -0.8 2,303,210 - BWI76_RS10900 0.16 -0.6
Or see this region's nucleotide sequence