Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10295 and BWI76_RS10300 are separated by 164 nucleotides BWI76_RS10300 and BWI76_RS10305 are separated by 167 nucleotides BWI76_RS10305 and BWI76_RS10310 are separated by 100 nucleotides
BWI76_RS10295: BWI76_RS10295 - short chain dehydrogenase/reductase family oxidoreductase, at 2,179,777 to 2,180,562
_RS10295
BWI76_RS10300: BWI76_RS10300 - MFS transporter, at 2,180,727 to 2,182,163
_RS10300
BWI76_RS10305: BWI76_RS10305 - transposase, at 2,182,331 to 2,182,927
_RS10305
BWI76_RS10310: BWI76_RS10310 - DNA-binding transcriptional regulator RamA, at 2,183,028 to 2,183,372
_RS10310
Position (kb)
2180
2181
2182
2183 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2180.288 kb on + strand, within BWI76_RS10295 at 2180.309 kb on + strand, within BWI76_RS10295 at 2180.453 kb on - strand, within BWI76_RS10295 at 2180.466 kb on - strand, within BWI76_RS10295 at 2180.807 kb on + strand at 2180.838 kb on + strand at 2181.111 kb on + strand, within BWI76_RS10300 at 2181.390 kb on + strand, within BWI76_RS10300 at 2181.390 kb on + strand, within BWI76_RS10300 at 2181.508 kb on - strand, within BWI76_RS10300 at 2181.516 kb on + strand, within BWI76_RS10300 at 2181.586 kb on - strand, within BWI76_RS10300 at 2181.598 kb on - strand, within BWI76_RS10300 at 2181.844 kb on + strand, within BWI76_RS10300 at 2181.950 kb on - strand, within BWI76_RS10300 at 2182.024 kb on - strand at 2182.246 kb on - strand at 2182.410 kb on + strand, within BWI76_RS10305 at 2182.495 kb on + strand, within BWI76_RS10305 at 2182.622 kb on + strand, within BWI76_RS10305 at 2182.622 kb on + strand, within BWI76_RS10305 at 2182.640 kb on + strand, within BWI76_RS10305 at 2182.651 kb on + strand, within BWI76_RS10305 at 2182.681 kb on + strand, within BWI76_RS10305 at 2182.681 kb on + strand, within BWI76_RS10305 at 2182.681 kb on + strand, within BWI76_RS10305 at 2182.705 kb on + strand, within BWI76_RS10305 at 2182.705 kb on + strand, within BWI76_RS10305 at 2182.711 kb on + strand, within BWI76_RS10305 at 2182.751 kb on + strand, within BWI76_RS10305 at 2182.751 kb on + strand, within BWI76_RS10305 at 2182.772 kb on + strand, within BWI76_RS10305 at 2182.930 kb on - strand at 2182.930 kb on - strand at 2182.943 kb on + strand at 2183.093 kb on + strand, within BWI76_RS10310 at 2183.098 kb on + strand, within BWI76_RS10310 at 2183.098 kb on + strand, within BWI76_RS10310 at 2183.098 kb on + strand, within BWI76_RS10310
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,180,288 + BWI76_RS10295 0.65 -2.3 2,180,309 + BWI76_RS10295 0.68 -0.1 2,180,453 - BWI76_RS10295 0.86 -0.6 2,180,466 - BWI76_RS10295 0.88 +2.4 2,180,807 + -0.7 2,180,838 + +0.7 2,181,111 + BWI76_RS10300 0.27 -0.6 2,181,390 + BWI76_RS10300 0.46 +5.7 2,181,390 + BWI76_RS10300 0.46 +1.3 2,181,508 - BWI76_RS10300 0.54 -2.2 2,181,516 + BWI76_RS10300 0.55 +0.1 2,181,586 - BWI76_RS10300 0.60 -0.9 2,181,598 - BWI76_RS10300 0.61 -0.2 2,181,844 + BWI76_RS10300 0.78 +1.0 2,181,950 - BWI76_RS10300 0.85 -0.7 2,182,024 - +0.4 2,182,246 - +1.3 2,182,410 + BWI76_RS10305 0.13 -0.8 2,182,495 + BWI76_RS10305 0.27 +1.2 2,182,622 + BWI76_RS10305 0.49 -2.0 2,182,622 + BWI76_RS10305 0.49 -0.5 2,182,640 + BWI76_RS10305 0.52 -1.3 2,182,651 + BWI76_RS10305 0.54 -1.1 2,182,681 + BWI76_RS10305 0.59 -0.3 2,182,681 + BWI76_RS10305 0.59 -1.3 2,182,681 + BWI76_RS10305 0.59 +0.4 2,182,705 + BWI76_RS10305 0.63 -2.2 2,182,705 + BWI76_RS10305 0.63 -2.7 2,182,711 + BWI76_RS10305 0.64 -1.6 2,182,751 + BWI76_RS10305 0.70 -1.8 2,182,751 + BWI76_RS10305 0.70 +0.0 2,182,772 + BWI76_RS10305 0.74 -0.8 2,182,930 - -1.6 2,182,930 - +0.4 2,182,943 + +0.6 2,183,093 + BWI76_RS10310 0.19 -0.2 2,183,098 + BWI76_RS10310 0.20 -1.5 2,183,098 + BWI76_RS10310 0.20 +0.1 2,183,098 + BWI76_RS10310 0.20 -0.8
Or see this region's nucleotide sequence