Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09035

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09030 and BWI76_RS09035 are separated by 190 nucleotidesBWI76_RS09035 and BWI76_RS09040 are separated by 177 nucleotides BWI76_RS09030: BWI76_RS09030 - transpeptidase, at 1,902,304 to 1,903,218 _RS09030 BWI76_RS09035: BWI76_RS09035 - protein tyrosine/serine phosphatase, at 1,903,409 to 1,904,191 _RS09035 BWI76_RS09040: BWI76_RS09040 - ABC-F family ATPase, at 1,904,369 to 1,905,961 _RS09040 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -2 -1 0 1at 1902.523 kb on + strand, within BWI76_RS09030at 1902.598 kb on + strand, within BWI76_RS09030at 1902.640 kb on + strand, within BWI76_RS09030at 1902.840 kb on + strand, within BWI76_RS09030at 1902.848 kb on - strand, within BWI76_RS09030at 1902.913 kb on + strand, within BWI76_RS09030at 1903.201 kb on + strandat 1903.632 kb on + strand, within BWI76_RS09035at 1903.632 kb on + strand, within BWI76_RS09035at 1903.717 kb on - strand, within BWI76_RS09035at 1903.737 kb on + strand, within BWI76_RS09035at 1903.883 kb on - strand, within BWI76_RS09035at 1904.009 kb on + strand, within BWI76_RS09035at 1904.233 kb on + strandat 1904.339 kb on + strandat 1904.398 kb on + strandat 1904.398 kb on + strandat 1904.610 kb on - strand, within BWI76_RS09040at 1904.649 kb on - strand, within BWI76_RS09040at 1904.812 kb on + strand, within BWI76_RS09040at 1904.852 kb on - strand, within BWI76_RS09040at 1904.946 kb on + strand, within BWI76_RS09040

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,902,523 + BWI76_RS09030 0.24 -0.2
1,902,598 + BWI76_RS09030 0.32 +0.1
1,902,640 + BWI76_RS09030 0.37 -0.2
1,902,840 + BWI76_RS09030 0.59 +0.4
1,902,848 - BWI76_RS09030 0.59 +1.1
1,902,913 + BWI76_RS09030 0.67 -0.6
1,903,201 + -0.9
1,903,632 + BWI76_RS09035 0.28 +0.7
1,903,632 + BWI76_RS09035 0.28 -0.5
1,903,717 - BWI76_RS09035 0.39 -2.0
1,903,737 + BWI76_RS09035 0.42 +1.1
1,903,883 - BWI76_RS09035 0.61 -1.3
1,904,009 + BWI76_RS09035 0.77 -0.9
1,904,233 + -1.0
1,904,339 + +0.3
1,904,398 + +0.5
1,904,398 + +0.2
1,904,610 - BWI76_RS09040 0.15 +0.5
1,904,649 - BWI76_RS09040 0.18 -0.4
1,904,812 + BWI76_RS09040 0.28 -1.4
1,904,852 - BWI76_RS09040 0.30 -0.9
1,904,946 + BWI76_RS09040 0.36 -0.8

Or see this region's nucleotide sequence