Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08815

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08805 and BWI76_RS08810 are separated by 28 nucleotidesBWI76_RS08810 and BWI76_RS08815 are separated by 111 nucleotidesBWI76_RS08815 and BWI76_RS08820 are separated by 11 nucleotidesBWI76_RS08820 and BWI76_RS08825 are separated by 3 nucleotides BWI76_RS08805: BWI76_RS08805 - gluconeogenesis factor, at 1,857,269 to 1,858,174 _RS08805 BWI76_RS08810: BWI76_RS08810 - hypothetical protein, at 1,858,203 to 1,858,397 _RS08810 BWI76_RS08815: BWI76_RS08815 - cyclic pyranopterin phosphate synthase, at 1,858,509 to 1,859,508 _RS08815 BWI76_RS08820: BWI76_RS08820 - molybdenum cofactor biosynthesis protein, at 1,859,520 to 1,860,032 _RS08820 BWI76_RS08825: BWI76_RS08825 - cyclic pyranopterin monophosphate synthase MoaC, at 1,860,036 to 1,860,524 _RS08825 Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -1 0 1 2 3at 1857.550 kb on - strand, within BWI76_RS08805at 1857.725 kb on + strand, within BWI76_RS08805at 1857.978 kb on - strand, within BWI76_RS08805at 1858.072 kb on + strand, within BWI76_RS08805at 1858.214 kb on + strandat 1858.397 kb on + strandat 1858.397 kb on + strandat 1858.404 kb on - strandat 1858.505 kb on + strandat 1858.513 kb on + strandat 1858.833 kb on + strand, within BWI76_RS08815at 1859.001 kb on - strand, within BWI76_RS08815at 1859.011 kb on + strand, within BWI76_RS08815at 1859.062 kb on + strand, within BWI76_RS08815at 1859.252 kb on + strand, within BWI76_RS08815at 1859.327 kb on + strand, within BWI76_RS08815at 1859.536 kb on - strandat 1859.592 kb on + strand, within BWI76_RS08820at 1859.821 kb on - strand, within BWI76_RS08820at 1859.866 kb on - strand, within BWI76_RS08820at 1859.965 kb on + strand, within BWI76_RS08820at 1860.154 kb on - strand, within BWI76_RS08825at 1860.268 kb on - strand, within BWI76_RS08825at 1860.425 kb on - strand, within BWI76_RS08825

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,857,550 - BWI76_RS08805 0.31 +1.5
1,857,725 + BWI76_RS08805 0.50 +0.1
1,857,978 - BWI76_RS08805 0.78 -0.4
1,858,072 + BWI76_RS08805 0.89 -1.6
1,858,214 + -0.5
1,858,397 + +3.0
1,858,397 + -0.4
1,858,404 - +1.9
1,858,505 + +0.5
1,858,513 + +3.7
1,858,833 + BWI76_RS08815 0.32 +0.2
1,859,001 - BWI76_RS08815 0.49 +1.3
1,859,011 + BWI76_RS08815 0.50 +1.6
1,859,062 + BWI76_RS08815 0.55 +1.8
1,859,252 + BWI76_RS08815 0.74 +0.9
1,859,327 + BWI76_RS08815 0.82 +2.1
1,859,536 - +0.6
1,859,592 + BWI76_RS08820 0.14 +0.3
1,859,821 - BWI76_RS08820 0.59 +1.5
1,859,866 - BWI76_RS08820 0.67 +2.0
1,859,965 + BWI76_RS08820 0.87 -0.3
1,860,154 - BWI76_RS08825 0.24 +1.4
1,860,268 - BWI76_RS08825 0.47 +1.6
1,860,425 - BWI76_RS08825 0.80 +0.4

Or see this region's nucleotide sequence