Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08785

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08780 and BWI76_RS08785 are separated by 701 nucleotidesBWI76_RS08785 and BWI76_RS08790 are separated by 301 nucleotides BWI76_RS08780: BWI76_RS08780 - ABC transporter, at 1,850,003 to 1,850,725 _RS08780 BWI76_RS08785: BWI76_RS08785 - excinuclease ABC subunit B, at 1,851,427 to 1,853,442 _RS08785 BWI76_RS08790: BWI76_RS08790 - two-component sensor histidine kinase, at 1,853,744 to 1,854,841 _RS08790 Position (kb) 1851 1852 1853 1854Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 1850.583 kb on + strand, within BWI76_RS08780at 1850.997 kb on - strandat 1851.425 kb on - strandat 1851.517 kb on + strandat 1851.642 kb on + strand, within BWI76_RS08785at 1851.923 kb on + strand, within BWI76_RS08785at 1851.940 kb on + strand, within BWI76_RS08785at 1852.060 kb on - strand, within BWI76_RS08785at 1852.064 kb on + strand, within BWI76_RS08785at 1852.297 kb on - strand, within BWI76_RS08785at 1852.436 kb on - strand, within BWI76_RS08785at 1852.618 kb on - strand, within BWI76_RS08785at 1852.951 kb on + strand, within BWI76_RS08785at 1853.174 kb on + strand, within BWI76_RS08785at 1853.232 kb on - strand, within BWI76_RS08785at 1853.424 kb on + strandat 1853.458 kb on + strandat 1853.572 kb on - strandat 1853.578 kb on - strandat 1853.666 kb on - strandat 1853.800 kb on + strandat 1853.856 kb on - strand, within BWI76_RS08790at 1853.876 kb on + strand, within BWI76_RS08790at 1854.135 kb on - strand, within BWI76_RS08790at 1854.340 kb on + strand, within BWI76_RS08790at 1854.340 kb on + strand, within BWI76_RS08790at 1854.370 kb on - strand, within BWI76_RS08790

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,850,583 + BWI76_RS08780 0.80 -2.2
1,850,997 - -0.6
1,851,425 - -0.4
1,851,517 + +1.7
1,851,642 + BWI76_RS08785 0.11 -2.8
1,851,923 + BWI76_RS08785 0.25 +0.2
1,851,940 + BWI76_RS08785 0.25 +0.4
1,852,060 - BWI76_RS08785 0.31 +0.5
1,852,064 + BWI76_RS08785 0.32 -1.1
1,852,297 - BWI76_RS08785 0.43 +0.3
1,852,436 - BWI76_RS08785 0.50 -0.2
1,852,618 - BWI76_RS08785 0.59 -2.4
1,852,951 + BWI76_RS08785 0.76 +7.8
1,853,174 + BWI76_RS08785 0.87 +0.2
1,853,232 - BWI76_RS08785 0.90 +0.2
1,853,424 + +0.4
1,853,458 + -0.0
1,853,572 - +0.1
1,853,578 - +1.0
1,853,666 - -0.1
1,853,800 + -1.2
1,853,856 - BWI76_RS08790 0.10 +5.0
1,853,876 + BWI76_RS08790 0.12 -0.1
1,854,135 - BWI76_RS08790 0.36 -0.9
1,854,340 + BWI76_RS08790 0.54 +0.6
1,854,340 + BWI76_RS08790 0.54 -0.5
1,854,370 - BWI76_RS08790 0.57 +1.6

Or see this region's nucleotide sequence