Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07830

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07825 and BWI76_RS07830 are separated by 46 nucleotidesBWI76_RS07830 and BWI76_RS07835 are separated by 25 nucleotides BWI76_RS07825: BWI76_RS07825 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,659,246 to 1,660,274 _RS07825 BWI76_RS07830: BWI76_RS07830 - 3-phytase, at 1,660,321 to 1,661,589 _RS07830 BWI76_RS07835: BWI76_RS07835 - MFS transporter, at 1,661,615 to 1,662,976 _RS07835 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -1 0 1 2 3 4at 1659.344 kb on + strandat 1659.450 kb on + strand, within BWI76_RS07825at 1659.536 kb on - strand, within BWI76_RS07825at 1659.831 kb on - strand, within BWI76_RS07825at 1659.831 kb on - strand, within BWI76_RS07825at 1659.831 kb on - strand, within BWI76_RS07825at 1659.885 kb on - strand, within BWI76_RS07825at 1659.920 kb on - strand, within BWI76_RS07825at 1660.053 kb on - strand, within BWI76_RS07825at 1660.136 kb on - strand, within BWI76_RS07825at 1660.206 kb on + strandat 1660.236 kb on - strandat 1660.238 kb on + strandat 1660.408 kb on - strandat 1660.733 kb on + strand, within BWI76_RS07830at 1661.173 kb on - strand, within BWI76_RS07830at 1661.307 kb on + strand, within BWI76_RS07830at 1661.515 kb on + strandat 1661.606 kb on + strandat 1662.003 kb on + strand, within BWI76_RS07835at 1662.003 kb on + strand, within BWI76_RS07835at 1662.013 kb on - strand, within BWI76_RS07835at 1662.147 kb on + strand, within BWI76_RS07835

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,659,344 + +0.6
1,659,450 + BWI76_RS07825 0.20 +0.1
1,659,536 - BWI76_RS07825 0.28 +1.3
1,659,831 - BWI76_RS07825 0.57 +0.4
1,659,831 - BWI76_RS07825 0.57 -0.6
1,659,831 - BWI76_RS07825 0.57 +1.3
1,659,885 - BWI76_RS07825 0.62 -0.6
1,659,920 - BWI76_RS07825 0.66 -0.9
1,660,053 - BWI76_RS07825 0.78 -0.1
1,660,136 - BWI76_RS07825 0.86 +4.3
1,660,206 + -1.2
1,660,236 - -1.5
1,660,238 + +0.0
1,660,408 - +0.2
1,660,733 + BWI76_RS07830 0.32 -0.1
1,661,173 - BWI76_RS07830 0.67 +0.3
1,661,307 + BWI76_RS07830 0.78 -0.1
1,661,515 + +1.3
1,661,606 + +1.6
1,662,003 + BWI76_RS07835 0.28 -0.2
1,662,003 + BWI76_RS07835 0.28 +1.0
1,662,013 - BWI76_RS07835 0.29 +0.1
1,662,147 + BWI76_RS07835 0.39 -0.9

Or see this region's nucleotide sequence