Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07810

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07805 and BWI76_RS07810 are separated by 20 nucleotidesBWI76_RS07810 and BWI76_RS07815 overlap by 4 nucleotides BWI76_RS07805: BWI76_RS07805 - sugar ABC transporter permease, at 1,654,495 to 1,655,493 _RS07805 BWI76_RS07810: BWI76_RS07810 - sugar ABC transporter periplasmic sugar-binding protein, at 1,655,514 to 1,656,578 _RS07810 BWI76_RS07815: BWI76_RS07815 - hypothetical protein, at 1,656,575 to 1,657,816 _RS07815 Position (kb) 1655 1656 1657Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1654.821 kb on - strand, within BWI76_RS07805at 1654.838 kb on - strand, within BWI76_RS07805at 1655.123 kb on - strand, within BWI76_RS07805at 1655.560 kb on - strandat 1655.888 kb on - strand, within BWI76_RS07810at 1655.888 kb on - strand, within BWI76_RS07810at 1655.956 kb on - strand, within BWI76_RS07810at 1656.128 kb on + strand, within BWI76_RS07810at 1656.194 kb on + strand, within BWI76_RS07810at 1656.219 kb on - strand, within BWI76_RS07810at 1656.337 kb on + strand, within BWI76_RS07810at 1656.591 kb on + strandat 1656.599 kb on - strandat 1656.619 kb on + strandat 1656.644 kb on + strandat 1656.669 kb on - strandat 1656.920 kb on - strand, within BWI76_RS07815at 1657.029 kb on - strand, within BWI76_RS07815at 1657.270 kb on - strand, within BWI76_RS07815at 1657.318 kb on + strand, within BWI76_RS07815at 1657.363 kb on - strand, within BWI76_RS07815

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,654,821 - BWI76_RS07805 0.33 -1.7
1,654,838 - BWI76_RS07805 0.34 +1.6
1,655,123 - BWI76_RS07805 0.63 +1.4
1,655,560 - -1.3
1,655,888 - BWI76_RS07810 0.35 +0.2
1,655,888 - BWI76_RS07810 0.35 +0.6
1,655,956 - BWI76_RS07810 0.42 -2.3
1,656,128 + BWI76_RS07810 0.58 -1.0
1,656,194 + BWI76_RS07810 0.64 +5.5
1,656,219 - BWI76_RS07810 0.66 +1.0
1,656,337 + BWI76_RS07810 0.77 +1.5
1,656,591 + -0.8
1,656,599 - +0.6
1,656,619 + -2.5
1,656,644 + +0.2
1,656,669 - -0.1
1,656,920 - BWI76_RS07815 0.28 -0.1
1,657,029 - BWI76_RS07815 0.37 -0.7
1,657,270 - BWI76_RS07815 0.56 -0.4
1,657,318 + BWI76_RS07815 0.60 -1.2
1,657,363 - BWI76_RS07815 0.63 -1.2

Or see this region's nucleotide sequence