Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06755

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06750 and BWI76_RS06755 overlap by 26 nucleotidesBWI76_RS06755 and BWI76_RS06760 are separated by 126 nucleotidesBWI76_RS06760 and BWI76_RS06765 are separated by 161 nucleotides BWI76_RS06750: BWI76_RS06750 - GntR family transcriptional regulator with, at 1,415,001 to 1,416,455 _RS06750 BWI76_RS06755: BWI76_RS06755 - sigma factor YlaC, at 1,416,430 to 1,416,900 _RS06755 BWI76_RS06760: BWI76_RS06760 - maltose O-acetyltransferase, at 1,417,027 to 1,417,593 _RS06760 BWI76_RS06765: BWI76_RS06765 - transcriptional regulator, at 1,417,755 to 1,417,973 _RS06765 Position (kb) 1416 1417Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1415.536 kb on - strand, within BWI76_RS06750at 1415.548 kb on + strand, within BWI76_RS06750at 1415.604 kb on + strand, within BWI76_RS06750at 1415.612 kb on - strand, within BWI76_RS06750at 1415.737 kb on + strand, within BWI76_RS06750at 1415.802 kb on + strand, within BWI76_RS06750at 1415.877 kb on + strand, within BWI76_RS06750at 1415.885 kb on - strand, within BWI76_RS06750at 1415.916 kb on - strand, within BWI76_RS06750at 1416.071 kb on + strand, within BWI76_RS06750at 1416.366 kb on + strandat 1416.366 kb on + strandat 1416.668 kb on - strand, within BWI76_RS06755at 1416.747 kb on + strand, within BWI76_RS06755at 1416.755 kb on - strandat 1416.755 kb on - strand, within BWI76_RS06755at 1416.767 kb on + strand, within BWI76_RS06755at 1417.026 kb on - strandat 1417.093 kb on - strand, within BWI76_RS06760at 1417.165 kb on - strand, within BWI76_RS06760at 1417.196 kb on - strand, within BWI76_RS06760at 1417.227 kb on - strand, within BWI76_RS06760at 1417.290 kb on + strand, within BWI76_RS06760at 1417.297 kb on - strand, within BWI76_RS06760at 1417.408 kb on + strand, within BWI76_RS06760at 1417.503 kb on - strand, within BWI76_RS06760at 1417.503 kb on - strand, within BWI76_RS06760at 1417.511 kb on + strand, within BWI76_RS06760at 1417.526 kb on + strand, within BWI76_RS06760at 1417.534 kb on - strand, within BWI76_RS06760at 1417.537 kb on + strandat 1417.555 kb on - strandat 1417.555 kb on - strandat 1417.589 kb on + strandat 1417.599 kb on - strandat 1417.674 kb on - strandat 1417.691 kb on + strandat 1417.691 kb on - strandat 1417.691 kb on - strandat 1417.691 kb on - strandat 1417.697 kb on - strandat 1417.702 kb on - strandat 1417.767 kb on + strandat 1417.788 kb on - strand, within BWI76_RS06765at 1417.791 kb on + strand, within BWI76_RS06765at 1417.848 kb on - strand, within BWI76_RS06765

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,415,536 - BWI76_RS06750 0.37 -0.4
1,415,548 + BWI76_RS06750 0.38 -0.3
1,415,604 + BWI76_RS06750 0.41 -0.4
1,415,612 - BWI76_RS06750 0.42 -1.2
1,415,737 + BWI76_RS06750 0.51 -0.1
1,415,802 + BWI76_RS06750 0.55 -0.0
1,415,877 + BWI76_RS06750 0.60 +0.3
1,415,885 - BWI76_RS06750 0.61 -0.8
1,415,916 - BWI76_RS06750 0.63 +1.7
1,416,071 + BWI76_RS06750 0.74 -0.8
1,416,366 + -0.2
1,416,366 + +0.4
1,416,668 - BWI76_RS06755 0.51 -0.4
1,416,747 + BWI76_RS06755 0.67 -2.0
1,416,755 - -0.4
1,416,755 - BWI76_RS06755 0.69 -1.9
1,416,767 + BWI76_RS06755 0.72 -1.3
1,417,026 - +0.3
1,417,093 - BWI76_RS06760 0.12 -0.2
1,417,165 - BWI76_RS06760 0.24 -0.6
1,417,196 - BWI76_RS06760 0.30 +2.6
1,417,227 - BWI76_RS06760 0.35 +0.6
1,417,290 + BWI76_RS06760 0.46 -1.6
1,417,297 - BWI76_RS06760 0.48 +0.1
1,417,408 + BWI76_RS06760 0.67 -0.6
1,417,503 - BWI76_RS06760 0.84 -0.6
1,417,503 - BWI76_RS06760 0.84 +0.4
1,417,511 + BWI76_RS06760 0.85 -0.7
1,417,526 + BWI76_RS06760 0.88 +0.4
1,417,534 - BWI76_RS06760 0.89 +0.4
1,417,537 + -0.1
1,417,555 - -0.1
1,417,555 - +0.8
1,417,589 + +2.7
1,417,599 - +1.5
1,417,674 - +1.4
1,417,691 + +2.1
1,417,691 - -0.4
1,417,691 - +0.7
1,417,691 - -1.3
1,417,697 - -1.6
1,417,702 - -2.0
1,417,767 + +0.8
1,417,788 - BWI76_RS06765 0.15 +2.8
1,417,791 + BWI76_RS06765 0.16 +1.1
1,417,848 - BWI76_RS06765 0.42 -0.3

Or see this region's nucleotide sequence