Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03310

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS03305 and BWI76_RS03310 are separated by 24 nucleotidesBWI76_RS03310 and BWI76_RS03315 are separated by 186 nucleotides BWI76_RS03305: BWI76_RS03305 - hypothetical protein, at 681,094 to 682,334 _RS03305 BWI76_RS03310: BWI76_RS03310 - AraC family transcriptional regulator, at 682,359 to 682,946 _RS03310 BWI76_RS03315: BWI76_RS03315 - clavaldehyde dehydrogenase, at 683,133 to 683,900 _RS03315 Position (kb) 682 683Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 682.401 kb on - strandat 682.457 kb on + strand, within BWI76_RS03310at 682.462 kb on + strand, within BWI76_RS03310at 682.660 kb on + strand, within BWI76_RS03310at 682.744 kb on - strand, within BWI76_RS03310at 682.776 kb on + strand, within BWI76_RS03310at 682.943 kb on + strandat 683.035 kb on + strandat 683.180 kb on - strandat 683.424 kb on - strand, within BWI76_RS03315at 683.497 kb on + strandat 683.548 kb on + strand, within BWI76_RS03315at 683.554 kb on + strand, within BWI76_RS03315at 683.562 kb on - strand, within BWI76_RS03315at 683.562 kb on - strand, within BWI76_RS03315at 683.844 kb on + strandat 683.934 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
682,401 - +0.4
682,457 + BWI76_RS03310 0.17 -1.0
682,462 + BWI76_RS03310 0.18 -0.9
682,660 + BWI76_RS03310 0.51 -0.9
682,744 - BWI76_RS03310 0.65 -2.2
682,776 + BWI76_RS03310 0.71 -1.4
682,943 + +3.8
683,035 + -1.1
683,180 - +0.2
683,424 - BWI76_RS03315 0.38 +1.1
683,497 + +0.8
683,548 + BWI76_RS03315 0.54 -0.4
683,554 + BWI76_RS03315 0.55 +0.1
683,562 - BWI76_RS03315 0.56 -1.3
683,562 - BWI76_RS03315 0.56 -0.8
683,844 + +0.7
683,934 + +0.4

Or see this region's nucleotide sequence