Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01880 and BWI76_RS01885 are separated by 133 nucleotides BWI76_RS01885 and BWI76_RS01890 are separated by 90 nucleotides BWI76_RS01890 and BWI76_RS01895 are separated by 192 nucleotides
BWI76_RS01880: BWI76_RS01880 - MATE family efflux transporter, at 383,783 to 385,099
_RS01880
BWI76_RS01885: BWI76_RS01885 - CsbD family protein, at 385,233 to 385,445
_RS01885
BWI76_RS01890: BWI76_RS01890 - transcriptional regulator Zur, at 385,536 to 386,051
_RS01890
BWI76_RS01895: BWI76_RS01895 - cupin, at 386,244 to 386,732
_RS01895
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 384.295 kb on - strand, within BWI76_RS01880 at 384.328 kb on + strand, within BWI76_RS01880 at 384.397 kb on + strand, within BWI76_RS01880 at 384.405 kb on - strand, within BWI76_RS01880 at 384.414 kb on + strand, within BWI76_RS01880 at 384.660 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.678 kb on - strand, within BWI76_RS01880 at 384.918 kb on + strand, within BWI76_RS01880 at 384.926 kb on - strand, within BWI76_RS01880 at 384.937 kb on - strand, within BWI76_RS01880 at 384.962 kb on + strand, within BWI76_RS01880 at 385.086 kb on - strand at 385.190 kb on + strand at 385.328 kb on + strand, within BWI76_RS01885 at 385.599 kb on - strand, within BWI76_RS01890 at 385.746 kb on + strand, within BWI76_RS01890 at 385.913 kb on + strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.937 kb on + strand, within BWI76_RS01890 at 386.040 kb on + strand at 386.186 kb on - strand at 386.208 kb on + strand at 386.209 kb on - strand at 386.213 kb on + strand at 386.295 kb on - strand, within BWI76_RS01895 at 386.314 kb on + strand, within BWI76_RS01895 at 386.322 kb on - strand, within BWI76_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 384,295 - BWI76_RS01880 0.39 -0.5 384,328 + BWI76_RS01880 0.41 +0.6 384,397 + BWI76_RS01880 0.47 -2.1 384,405 - BWI76_RS01880 0.47 -0.9 384,414 + BWI76_RS01880 0.48 +0.2 384,660 + BWI76_RS01880 0.67 -1.3 384,670 + BWI76_RS01880 0.67 -0.2 384,670 + BWI76_RS01880 0.67 +0.1 384,678 - BWI76_RS01880 0.68 -2.1 384,918 + BWI76_RS01880 0.86 -2.3 384,926 - BWI76_RS01880 0.87 -1.8 384,937 - BWI76_RS01880 0.88 -0.2 384,962 + BWI76_RS01880 0.90 -0.7 385,086 - -0.0 385,190 + +0.0 385,328 + BWI76_RS01885 0.45 -1.5 385,599 - BWI76_RS01890 0.12 +1.4 385,746 + BWI76_RS01890 0.41 -0.9 385,913 + BWI76_RS01890 0.73 +1.3 385,921 - BWI76_RS01890 0.75 +0.8 385,921 - BWI76_RS01890 0.75 -3.1 385,937 + BWI76_RS01890 0.78 -1.8 386,040 + +2.8 386,186 - -1.0 386,208 + +2.3 386,209 - -0.5 386,213 + -0.1 386,295 - BWI76_RS01895 0.10 -1.4 386,314 + BWI76_RS01895 0.14 -0.2 386,322 - BWI76_RS01895 0.16 +0.3
Or see this region's nucleotide sequence