Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01765 and BWI76_RS01770 are separated by 111 nucleotides BWI76_RS01770 and BWI76_RS01775 are separated by 105 nucleotides BWI76_RS01775 and BWI76_RS01780 are separated by 138 nucleotides
BWI76_RS01765: BWI76_RS01765 - hypothetical protein, at 360,090 to 361,031
_RS01765
BWI76_RS01770: BWI76_RS01770 - transcriptional regulatory protein RtcR, at 361,143 to 362,723
_RS01770
BWI76_RS01775: BWI76_RS01775 - hypothetical protein, at 362,829 to 363,032
_RS01775
BWI76_RS01780: BWI76_RS01780 - SPFH domain / Band 7 family protein, at 363,171 to 364,298
_RS01780
Position (kb) 361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 360.339 kb on - strand, within BWI76_RS01765 at 360.349 kb on + strand, within BWI76_RS01765 at 360.367 kb on + strand, within BWI76_RS01765 at 360.417 kb on - strand, within BWI76_RS01765 at 360.518 kb on + strand, within BWI76_RS01765 at 360.527 kb on - strand, within BWI76_RS01765 at 360.553 kb on + strand, within BWI76_RS01765 at 360.561 kb on - strand, within BWI76_RS01765 at 360.561 kb on - strand, within BWI76_RS01765 at 360.671 kb on - strand, within BWI76_RS01765 at 360.740 kb on + strand, within BWI76_RS01765 at 360.895 kb on + strand, within BWI76_RS01765 at 361.073 kb on - strand at 361.073 kb on - strand at 361.086 kb on + strand at 361.171 kb on - strand at 361.393 kb on + strand, within BWI76_RS01770 at 361.399 kb on - strand, within BWI76_RS01770 at 361.532 kb on + strand, within BWI76_RS01770 at 361.809 kb on - strand, within BWI76_RS01770 at 361.815 kb on + strand, within BWI76_RS01770 at 361.874 kb on - strand, within BWI76_RS01770 at 361.929 kb on - strand, within BWI76_RS01770 at 361.965 kb on - strand, within BWI76_RS01770 at 362.224 kb on - strand, within BWI76_RS01770 at 362.307 kb on - strand, within BWI76_RS01770 at 362.307 kb on - strand, within BWI76_RS01770 at 362.374 kb on - strand, within BWI76_RS01770 at 362.439 kb on + strand at 362.460 kb on - strand, within BWI76_RS01770 at 362.460 kb on - strand, within BWI76_RS01770 at 362.460 kb on - strand, within BWI76_RS01770 at 362.584 kb on + strand at 362.632 kb on - strand at 362.689 kb on - strand at 362.916 kb on - strand, within BWI76_RS01775 at 363.055 kb on - strand at 363.055 kb on - strand at 363.055 kb on - strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.066 kb on + strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.074 kb on - strand at 363.240 kb on - strand at 363.272 kb on + strand at 363.374 kb on + strand, within BWI76_RS01780 at 363.377 kb on - strand, within BWI76_RS01780 at 363.419 kb on - strand, within BWI76_RS01780 at 363.521 kb on + strand, within BWI76_RS01780 at 363.617 kb on + strand, within BWI76_RS01780 at 363.635 kb on + strand, within BWI76_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 360,339 - BWI76_RS01765 0.26 -0.3 360,349 + BWI76_RS01765 0.27 -0.3 360,367 + BWI76_RS01765 0.29 -1.1 360,417 - BWI76_RS01765 0.35 +0.1 360,518 + BWI76_RS01765 0.45 +0.5 360,527 - BWI76_RS01765 0.46 +0.3 360,553 + BWI76_RS01765 0.49 -1.3 360,561 - BWI76_RS01765 0.50 -0.3 360,561 - BWI76_RS01765 0.50 +0.2 360,671 - BWI76_RS01765 0.62 +0.0 360,740 + BWI76_RS01765 0.69 +0.2 360,895 + BWI76_RS01765 0.85 -0.9 361,073 - -0.5 361,073 - +1.4 361,086 + +0.4 361,171 - +0.9 361,393 + BWI76_RS01770 0.16 -1.4 361,399 - BWI76_RS01770 0.16 -0.7 361,532 + BWI76_RS01770 0.25 +0.2 361,809 - BWI76_RS01770 0.42 -0.5 361,815 + BWI76_RS01770 0.43 -0.7 361,874 - BWI76_RS01770 0.46 -0.8 361,929 - BWI76_RS01770 0.50 +2.8 361,965 - BWI76_RS01770 0.52 -0.5 362,224 - BWI76_RS01770 0.68 -0.1 362,307 - BWI76_RS01770 0.74 -0.9 362,307 - BWI76_RS01770 0.74 +0.1 362,374 - BWI76_RS01770 0.78 -1.2 362,439 + +1.8 362,460 - BWI76_RS01770 0.83 -2.2 362,460 - BWI76_RS01770 0.83 -0.5 362,460 - BWI76_RS01770 0.83 -1.1 362,584 + -0.6 362,632 - -2.0 362,689 - -0.1 362,916 - BWI76_RS01775 0.43 +0.3 363,055 - +0.3 363,055 - +0.5 363,055 - -0.6 363,066 + +0.6 363,066 + +0.8 363,066 + -0.5 363,066 + +0.3 363,066 + -0.5 363,074 - -0.8 363,074 - +0.9 363,074 - +0.6 363,074 - -1.2 363,240 - -0.4 363,272 + -1.6 363,374 + BWI76_RS01780 0.18 +0.6 363,377 - BWI76_RS01780 0.18 +2.0 363,419 - BWI76_RS01780 0.22 +0.6 363,521 + BWI76_RS01780 0.31 -0.3 363,617 + BWI76_RS01780 0.40 -1.0 363,635 + BWI76_RS01780 0.41 -1.3
Or see this region's nucleotide sequence