Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23450 and BWI76_RS23455 are separated by 96 nucleotides BWI76_RS23455 and BWI76_RS23460 are separated by 110 nucleotides BWI76_RS23460 and BWI76_RS23465 are separated by 116 nucleotides
BWI76_RS23450: BWI76_RS23450 - LysR family transcriptional regulator, at 4,893,121 to 4,893,993
_RS23450
BWI76_RS23455: BWI76_RS23455 - Na(+)-translocating NADH-quinone reductase subunit E, at 4,894,090 to 4,894,578
_RS23455
BWI76_RS23460: BWI76_RS23460 - hypothetical protein, at 4,894,689 to 4,895,918
_RS23460
BWI76_RS23465: BWI76_RS23465 - oxidoreductase, at 4,896,035 to 4,896,907
_RS23465
Position (kb)
4894
4895
4896 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4893.699 kb on + strand, within BWI76_RS23450 at 4893.714 kb on - strand, within BWI76_RS23450 at 4893.725 kb on - strand at 4893.790 kb on + strand, within BWI76_RS23450 at 4893.790 kb on + strand, within BWI76_RS23450 at 4893.791 kb on + strand, within BWI76_RS23450 at 4893.798 kb on - strand, within BWI76_RS23450 at 4893.798 kb on - strand, within BWI76_RS23450 at 4894.081 kb on + strand at 4894.110 kb on + strand at 4894.206 kb on - strand, within BWI76_RS23455 at 4894.442 kb on + strand, within BWI76_RS23455 at 4894.490 kb on + strand, within BWI76_RS23455 at 4894.806 kb on - strand at 4894.989 kb on + strand, within BWI76_RS23460 at 4894.994 kb on + strand, within BWI76_RS23460 at 4895.019 kb on - strand, within BWI76_RS23460 at 4895.136 kb on - strand, within BWI76_RS23460 at 4895.223 kb on + strand, within BWI76_RS23460 at 4895.616 kb on + strand, within BWI76_RS23460 at 4895.825 kb on + strand at 4895.838 kb on + strand at 4895.893 kb on + strand at 4895.946 kb on - strand at 4895.992 kb on + strand at 4895.992 kb on + strand at 4896.000 kb on - strand at 4896.024 kb on - strand at 4896.032 kb on + strand at 4896.260 kb on + strand, within BWI76_RS23465 at 4896.358 kb on + strand, within BWI76_RS23465 at 4896.387 kb on + strand, within BWI76_RS23465 at 4896.401 kb on - strand, within BWI76_RS23465 at 4896.470 kb on + strand, within BWI76_RS23465 at 4896.553 kb on - strand, within BWI76_RS23465 at 4896.684 kb on + strand, within BWI76_RS23465 at 4896.692 kb on - strand, within BWI76_RS23465 at 4896.768 kb on - strand, within BWI76_RS23465 at 4896.807 kb on + strand, within BWI76_RS23465 at 4896.807 kb on + strand, within BWI76_RS23465 at 4896.816 kb on - strand, within BWI76_RS23465 at 4896.869 kb on + strand at 4896.877 kb on - strand at 4896.882 kb on - strand at 4896.889 kb on + strand at 4896.890 kb on + strand at 4896.890 kb on + strand at 4896.890 kb on + strand at 4896.890 kb on + strand at 4896.891 kb on - strand at 4896.896 kb on + strand at 4896.898 kb on - strand at 4896.901 kb on + strand at 4896.914 kb on - strand at 4896.915 kb on - strand at 4896.916 kb on - strand at 4896.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,893,699 + BWI76_RS23450 0.66 -0.6 4,893,714 - BWI76_RS23450 0.68 +0.7 4,893,725 - +0.1 4,893,790 + BWI76_RS23450 0.77 +0.0 4,893,790 + BWI76_RS23450 0.77 +0.3 4,893,791 + BWI76_RS23450 0.77 -0.4 4,893,798 - BWI76_RS23450 0.78 +0.3 4,893,798 - BWI76_RS23450 0.78 +3.1 4,894,081 + -0.5 4,894,110 + -1.2 4,894,206 - BWI76_RS23455 0.24 +0.9 4,894,442 + BWI76_RS23455 0.72 -2.5 4,894,490 + BWI76_RS23455 0.82 +1.1 4,894,806 - -0.1 4,894,989 + BWI76_RS23460 0.24 -0.4 4,894,994 + BWI76_RS23460 0.25 -0.1 4,895,019 - BWI76_RS23460 0.27 -0.6 4,895,136 - BWI76_RS23460 0.36 -0.6 4,895,223 + BWI76_RS23460 0.43 +0.8 4,895,616 + BWI76_RS23460 0.75 -0.6 4,895,825 + -0.6 4,895,838 + +0.5 4,895,893 + -0.8 4,895,946 - -0.3 4,895,992 + -0.6 4,895,992 + +0.4 4,896,000 - -1.1 4,896,024 - +0.7 4,896,032 + -0.4 4,896,260 + BWI76_RS23465 0.26 -0.0 4,896,358 + BWI76_RS23465 0.37 -0.5 4,896,387 + BWI76_RS23465 0.40 +0.3 4,896,401 - BWI76_RS23465 0.42 -1.5 4,896,470 + BWI76_RS23465 0.50 +5.2 4,896,553 - BWI76_RS23465 0.59 -0.1 4,896,684 + BWI76_RS23465 0.74 -0.2 4,896,692 - BWI76_RS23465 0.75 +0.3 4,896,768 - BWI76_RS23465 0.84 -1.9 4,896,807 + BWI76_RS23465 0.88 -0.7 4,896,807 + BWI76_RS23465 0.88 -0.7 4,896,816 - BWI76_RS23465 0.89 -0.9 4,896,869 + -0.4 4,896,877 - -1.5 4,896,882 - -0.4 4,896,889 + -1.5 4,896,890 + +0.5 4,896,890 + -0.5 4,896,890 + +0.9 4,896,890 + -0.6 4,896,891 - -0.2 4,896,896 + +0.0 4,896,898 - -0.9 4,896,901 + -0.5 4,896,914 - -0.5 4,896,915 - -0.8 4,896,916 - -0.4 4,896,916 - -0.3
Or see this region's nucleotide sequence