Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22415

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22405 and BWI76_RS22410 are separated by 23 nucleotidesBWI76_RS22410 and BWI76_RS22415 are separated by 207 nucleotidesBWI76_RS22415 and BWI76_RS22420 are separated by 56 nucleotides BWI76_RS22405: BWI76_RS22405 - PTS cellobiose transporter subunit IIC, at 4,672,180 to 4,673,502 _RS22405 BWI76_RS22410: BWI76_RS22410 - PTS lactose/cellobiose transporter subunit IIA, at 4,673,526 to 4,673,840 _RS22410 BWI76_RS22415: BWI76_RS22415 - transcriptional regulator, at 4,674,048 to 4,674,962 _RS22415 BWI76_RS22420: BWI76_RS22420 - LacI family transcriptional regulator, at 4,675,019 to 4,675,981 _RS22420 Position (kb) 4674 4675Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 4673.243 kb on + strand, within BWI76_RS22405at 4673.258 kb on + strand, within BWI76_RS22405at 4673.374 kb on + strandat 4673.511 kb on + strandat 4673.603 kb on - strand, within BWI76_RS22410at 4673.605 kb on + strand, within BWI76_RS22410at 4673.613 kb on - strand, within BWI76_RS22410at 4673.778 kb on - strand, within BWI76_RS22410at 4673.851 kb on + strandat 4673.938 kb on + strandat 4674.152 kb on - strand, within BWI76_RS22415at 4674.162 kb on - strandat 4674.188 kb on + strand, within BWI76_RS22415at 4674.196 kb on - strand, within BWI76_RS22415at 4674.242 kb on + strand, within BWI76_RS22415at 4674.381 kb on - strand, within BWI76_RS22415at 4674.629 kb on + strand, within BWI76_RS22415at 4674.744 kb on - strand, within BWI76_RS22415at 4674.794 kb on + strand, within BWI76_RS22415at 4674.802 kb on - strand, within BWI76_RS22415at 4674.832 kb on - strand, within BWI76_RS22415at 4674.895 kb on - strandat 4674.948 kb on - strandat 4674.948 kb on - strandat 4674.948 kb on - strandat 4674.986 kb on - strandat 4674.989 kb on - strandat 4675.075 kb on - strandat 4675.132 kb on - strand, within BWI76_RS22420at 4675.258 kb on + strand, within BWI76_RS22420

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,673,243 + BWI76_RS22405 0.80 -0.1
4,673,258 + BWI76_RS22405 0.81 -0.0
4,673,374 + +0.0
4,673,511 + -0.6
4,673,603 - BWI76_RS22410 0.24 +1.2
4,673,605 + BWI76_RS22410 0.25 +0.1
4,673,613 - BWI76_RS22410 0.28 +0.4
4,673,778 - BWI76_RS22410 0.80 -0.0
4,673,851 + +2.8
4,673,938 + -0.6
4,674,152 - BWI76_RS22415 0.11 +2.3
4,674,162 - +0.7
4,674,188 + BWI76_RS22415 0.15 +0.1
4,674,196 - BWI76_RS22415 0.16 -0.0
4,674,242 + BWI76_RS22415 0.21 -0.2
4,674,381 - BWI76_RS22415 0.36 +2.9
4,674,629 + BWI76_RS22415 0.63 +0.1
4,674,744 - BWI76_RS22415 0.76 +3.5
4,674,794 + BWI76_RS22415 0.82 -2.5
4,674,802 - BWI76_RS22415 0.82 +0.4
4,674,832 - BWI76_RS22415 0.86 -0.6
4,674,895 - -0.1
4,674,948 - +7.4
4,674,948 - -0.4
4,674,948 - +0.2
4,674,986 - +0.6
4,674,989 - -1.0
4,675,075 - -0.6
4,675,132 - BWI76_RS22420 0.12 -3.6
4,675,258 + BWI76_RS22420 0.25 -2.1

Or see this region's nucleotide sequence