Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15145

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15140 and BWI76_RS15145 overlap by 4 nucleotidesBWI76_RS15145 and BWI76_RS15150 overlap by 1 nucleotides BWI76_RS15140: BWI76_RS15140 - CusA/CzcA family heavy metal efflux RND transporter, at 3,172,265 to 3,175,378 _RS15140 BWI76_RS15145: BWI76_RS15145 - efflux transporter periplasmic adaptor subunit, at 3,175,375 to 3,176,844 _RS15145 BWI76_RS15150: BWI76_RS15150 - outer membrane efflux protein, at 3,176,844 to 3,178,091 _RS15150 Position (kb) 3175 3176 3177Strain fitness (log2 ratio) -1 0 1at 3174.394 kb on + strand, within BWI76_RS15140at 3174.404 kb on + strand, within BWI76_RS15140at 3174.404 kb on + strand, within BWI76_RS15140at 3174.404 kb on + strand, within BWI76_RS15140at 3174.412 kb on - strand, within BWI76_RS15140at 3174.422 kb on + strand, within BWI76_RS15140at 3174.490 kb on + strand, within BWI76_RS15140at 3174.769 kb on + strand, within BWI76_RS15140at 3174.858 kb on - strand, within BWI76_RS15140at 3175.080 kb on - strandat 3175.182 kb on - strandat 3175.386 kb on + strandat 3175.394 kb on - strandat 3175.394 kb on - strandat 3175.594 kb on - strand, within BWI76_RS15145at 3175.681 kb on - strand, within BWI76_RS15145at 3175.681 kb on - strand, within BWI76_RS15145at 3175.683 kb on + strand, within BWI76_RS15145at 3175.691 kb on - strand, within BWI76_RS15145at 3176.300 kb on + strand, within BWI76_RS15145at 3176.374 kb on - strand, within BWI76_RS15145at 3176.588 kb on + strand, within BWI76_RS15145at 3176.656 kb on + strand, within BWI76_RS15145at 3176.712 kb on - strandat 3177.188 kb on - strand, within BWI76_RS15150at 3177.270 kb on - strand, within BWI76_RS15150at 3177.314 kb on - strand, within BWI76_RS15150at 3177.349 kb on + strand, within BWI76_RS15150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
3,174,394 + BWI76_RS15140 0.68 +1.0
3,174,404 + BWI76_RS15140 0.69 -0.2
3,174,404 + BWI76_RS15140 0.69 -0.8
3,174,404 + BWI76_RS15140 0.69 -0.0
3,174,412 - BWI76_RS15140 0.69 +0.1
3,174,422 + BWI76_RS15140 0.69 -0.5
3,174,490 + BWI76_RS15140 0.71 -1.2
3,174,769 + BWI76_RS15140 0.80 -0.2
3,174,858 - BWI76_RS15140 0.83 +0.1
3,175,080 - +0.3
3,175,182 - +0.6
3,175,386 + -0.3
3,175,394 - +0.1
3,175,394 - -0.7
3,175,594 - BWI76_RS15145 0.15 -0.4
3,175,681 - BWI76_RS15145 0.21 -0.7
3,175,681 - BWI76_RS15145 0.21 -0.9
3,175,683 + BWI76_RS15145 0.21 -0.6
3,175,691 - BWI76_RS15145 0.21 -0.6
3,176,300 + BWI76_RS15145 0.63 -1.0
3,176,374 - BWI76_RS15145 0.68 -0.6
3,176,588 + BWI76_RS15145 0.83 +0.5
3,176,656 + BWI76_RS15145 0.87 -1.0
3,176,712 - -1.0
3,177,188 - BWI76_RS15150 0.28 -0.9
3,177,270 - BWI76_RS15150 0.34 +0.2
3,177,314 - BWI76_RS15150 0.38 -0.4
3,177,349 + BWI76_RS15150 0.40 -0.3

Or see this region's nucleotide sequence