Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09880

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09875 and BWI76_RS09880 are separated by 591 nucleotidesBWI76_RS09880 and BWI76_RS09885 are separated by 308 nucleotides BWI76_RS09875: BWI76_RS09875 - phosphoporin PhoE, at 2,074,194 to 2,075,273 _RS09875 BWI76_RS09880: BWI76_RS09880 - asparagine--tRNA ligase, at 2,075,865 to 2,077,265 _RS09880 BWI76_RS09885: BWI76_RS09885 - nicotinate phosphoribosyltransferase, at 2,077,574 to 2,078,776 _RS09885 Position (kb) 2075 2076 2077 2078Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2074.865 kb on - strand, within BWI76_RS09875at 2075.040 kb on - strand, within BWI76_RS09875at 2075.401 kb on + strandat 2075.409 kb on - strandat 2075.751 kb on + strandat 2077.468 kb on - strandat 2077.506 kb on - strandat 2077.608 kb on + strandat 2077.609 kb on - strandat 2077.616 kb on - strandat 2077.633 kb on - strandat 2077.664 kb on + strandat 2077.664 kb on + strandat 2077.683 kb on + strandat 2077.697 kb on - strand, within BWI76_RS09885at 2077.748 kb on + strand, within BWI76_RS09885at 2077.756 kb on - strand, within BWI76_RS09885at 2077.757 kb on - strand, within BWI76_RS09885at 2077.890 kb on + strand, within BWI76_RS09885at 2078.016 kb on + strand, within BWI76_RS09885at 2078.147 kb on - strand, within BWI76_RS09885at 2078.212 kb on - strand, within BWI76_RS09885at 2078.229 kb on - strand, within BWI76_RS09885

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,074,865 - BWI76_RS09875 0.62 -1.0
2,075,040 - BWI76_RS09875 0.78 -0.8
2,075,401 + -0.7
2,075,409 - -1.2
2,075,751 + +0.7
2,077,468 - -0.8
2,077,506 - -1.1
2,077,608 + -0.0
2,077,609 - +1.5
2,077,616 - -0.6
2,077,633 - -1.9
2,077,664 + +0.7
2,077,664 + +1.5
2,077,683 + -0.2
2,077,697 - BWI76_RS09885 0.10 -1.2
2,077,748 + BWI76_RS09885 0.14 -0.3
2,077,756 - BWI76_RS09885 0.15 -0.3
2,077,757 - BWI76_RS09885 0.15 +3.5
2,077,890 + BWI76_RS09885 0.26 -0.5
2,078,016 + BWI76_RS09885 0.37 -0.3
2,078,147 - BWI76_RS09885 0.48 +0.0
2,078,212 - BWI76_RS09885 0.53 -0.2
2,078,229 - BWI76_RS09885 0.54 +0.1

Or see this region's nucleotide sequence