Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09010

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09000 and BWI76_RS09005 are separated by 182 nucleotidesBWI76_RS09005 and BWI76_RS09010 overlap by 4 nucleotidesBWI76_RS09010 and BWI76_RS09015 are separated by 109 nucleotides BWI76_RS09000: BWI76_RS09000 - hypothetical protein, at 1,896,911 to 1,897,036 _RS09000 BWI76_RS09005: BWI76_RS09005 - transcriptional regulator MntR, at 1,897,219 to 1,897,692 _RS09005 BWI76_RS09010: BWI76_RS09010 - anion transporter, at 1,897,689 to 1,898,795 _RS09010 BWI76_RS09015: BWI76_RS09015 - aldo/keto reductase, at 1,898,905 to 1,899,945 _RS09015 Position (kb) 1897 1898 1899Strain fitness (log2 ratio) -2 -1 0 1at 1896.730 kb on + strandat 1897.074 kb on - strandat 1897.234 kb on + strandat 1897.858 kb on - strand, within BWI76_RS09010at 1897.876 kb on + strand, within BWI76_RS09010at 1898.002 kb on - strand, within BWI76_RS09010at 1898.018 kb on - strand, within BWI76_RS09010at 1898.140 kb on + strand, within BWI76_RS09010at 1898.222 kb on - strand, within BWI76_RS09010at 1898.227 kb on - strand, within BWI76_RS09010at 1898.343 kb on - strand, within BWI76_RS09010at 1898.771 kb on - strandat 1898.865 kb on - strandat 1898.865 kb on - strandat 1898.950 kb on - strandat 1899.119 kb on - strand, within BWI76_RS09015at 1899.242 kb on + strand, within BWI76_RS09015at 1899.754 kb on + strand, within BWI76_RS09015at 1899.772 kb on - strand, within BWI76_RS09015

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,896,730 + +1.5
1,897,074 - +0.0
1,897,234 + -1.4
1,897,858 - BWI76_RS09010 0.15 -1.1
1,897,876 + BWI76_RS09010 0.17 -0.2
1,898,002 - BWI76_RS09010 0.28 -2.1
1,898,018 - BWI76_RS09010 0.30 +0.2
1,898,140 + BWI76_RS09010 0.41 -1.2
1,898,222 - BWI76_RS09010 0.48 -0.3
1,898,227 - BWI76_RS09010 0.49 -0.4
1,898,343 - BWI76_RS09010 0.59 -0.7
1,898,771 - +0.1
1,898,865 - -1.3
1,898,865 - +1.4
1,898,950 - -1.2
1,899,119 - BWI76_RS09015 0.21 -0.5
1,899,242 + BWI76_RS09015 0.32 -1.9
1,899,754 + BWI76_RS09015 0.82 -0.4
1,899,772 - BWI76_RS09015 0.83 +0.1

Or see this region's nucleotide sequence