Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06540

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06535 and BWI76_RS06540 are separated by 208 nucleotidesBWI76_RS06540 and BWI76_RS06545 are separated by 213 nucleotides BWI76_RS06535: BWI76_RS06535 - endopeptidase La, at 1,372,701 to 1,375,055 _RS06535 BWI76_RS06540: BWI76_RS06540 - DNA-binding protein HU-beta, at 1,375,264 to 1,375,536 _RS06540 BWI76_RS06545: BWI76_RS06545 - peptidylprolyl isomerase, at 1,375,750 to 1,377,624 _RS06545 Position (kb) 1375 1376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1374.267 kb on + strand, within BWI76_RS06535at 1374.486 kb on + strand, within BWI76_RS06535at 1374.486 kb on + strand, within BWI76_RS06535at 1374.890 kb on + strandat 1374.898 kb on - strandat 1375.143 kb on - strandat 1375.165 kb on + strandat 1375.166 kb on - strandat 1375.170 kb on + strandat 1375.173 kb on - strandat 1375.177 kb on + strandat 1375.199 kb on + strandat 1375.222 kb on + strandat 1375.425 kb on - strand, within BWI76_RS06540at 1375.507 kb on + strand, within BWI76_RS06540at 1375.636 kb on + strandat 1375.636 kb on + strandat 1375.836 kb on + strandat 1376.020 kb on + strand, within BWI76_RS06545at 1376.095 kb on - strand, within BWI76_RS06545at 1376.234 kb on - strand, within BWI76_RS06545at 1376.429 kb on + strand, within BWI76_RS06545

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,374,267 + BWI76_RS06535 0.66 -2.8
1,374,486 + BWI76_RS06535 0.76 -1.9
1,374,486 + BWI76_RS06535 0.76 -2.5
1,374,890 + -0.1
1,374,898 - -0.1
1,375,143 - -0.1
1,375,165 + -1.3
1,375,166 - +1.1
1,375,170 + -2.1
1,375,173 - -1.3
1,375,177 + +1.8
1,375,199 + +0.7
1,375,222 + -1.2
1,375,425 - BWI76_RS06540 0.59 -0.3
1,375,507 + BWI76_RS06540 0.89 -1.0
1,375,636 + +0.3
1,375,636 + +0.2
1,375,836 + -0.5
1,376,020 + BWI76_RS06545 0.14 +0.5
1,376,095 - BWI76_RS06545 0.18 +0.2
1,376,234 - BWI76_RS06545 0.26 -0.2
1,376,429 + BWI76_RS06545 0.36 -1.7

Or see this region's nucleotide sequence