Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27940 and BWI76_RS27945 overlap by 17 nucleotides BWI76_RS27945 and BWI76_RS27950 overlap by 4 nucleotides BWI76_RS27950 and BWI76_RS27955 are separated by 243 nucleotides
BWI76_RS27940: BWI76_RS27940 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 5,794,702 to 5,795,319
_RS27940
BWI76_RS27945: BWI76_RS27945 - 2-oxo-3-deoxygalactonate kinase, at 5,795,303 to 5,796,178
_RS27945
BWI76_RS27950: BWI76_RS27950 - transcriptional regulator, at 5,796,175 to 5,796,864
_RS27950
BWI76_RS27955: BWI76_RS27955 - sugar-phosphatase, at 5,797,108 to 5,797,920
_RS27955
Position (kb) 5796
5797 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5795.276 kb on - strand at 5795.291 kb on - strand at 5795.330 kb on + strand at 5795.338 kb on - strand at 5795.409 kb on - strand, within BWI76_RS27945 at 5795.707 kb on - strand, within BWI76_RS27945 at 5795.707 kb on - strand, within BWI76_RS27945 at 5795.815 kb on + strand, within BWI76_RS27945 at 5796.152 kb on + strand at 5796.328 kb on - strand, within BWI76_RS27950 at 5796.356 kb on - strand, within BWI76_RS27950 at 5796.381 kb on + strand, within BWI76_RS27950 at 5796.791 kb on - strand, within BWI76_RS27950 at 5796.828 kb on + strand at 5796.860 kb on + strand at 5796.891 kb on - strand at 5797.154 kb on + strand at 5797.207 kb on + strand, within BWI76_RS27955 at 5797.460 kb on + strand, within BWI76_RS27955 at 5797.460 kb on + strand, within BWI76_RS27955 at 5797.468 kb on - strand, within BWI76_RS27955 at 5797.544 kb on - strand, within BWI76_RS27955 at 5797.603 kb on - strand, within BWI76_RS27955 at 5797.662 kb on - strand, within BWI76_RS27955 at 5797.701 kb on + strand, within BWI76_RS27955 at 5797.795 kb on + strand, within BWI76_RS27955
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,795,276 - +0.0 5,795,291 - -0.3 5,795,330 + -0.9 5,795,338 - +0.7 5,795,409 - BWI76_RS27945 0.12 +0.5 5,795,707 - BWI76_RS27945 0.46 +1.0 5,795,707 - BWI76_RS27945 0.46 +0.1 5,795,815 + BWI76_RS27945 0.58 +1.0 5,796,152 + +0.4 5,796,328 - BWI76_RS27950 0.22 -2.6 5,796,356 - BWI76_RS27950 0.26 -0.5 5,796,381 + BWI76_RS27950 0.30 -0.6 5,796,791 - BWI76_RS27950 0.89 -2.2 5,796,828 + +0.4 5,796,860 + +4.7 5,796,891 - +0.8 5,797,154 + +0.0 5,797,207 + BWI76_RS27955 0.12 -0.3 5,797,460 + BWI76_RS27955 0.43 -0.5 5,797,460 + BWI76_RS27955 0.43 -2.0 5,797,468 - BWI76_RS27955 0.44 +1.5 5,797,544 - BWI76_RS27955 0.54 -0.4 5,797,603 - BWI76_RS27955 0.61 +1.0 5,797,662 - BWI76_RS27955 0.68 -1.4 5,797,701 + BWI76_RS27955 0.73 +0.5 5,797,795 + BWI76_RS27955 0.85 -0.5
Or see this region's nucleotide sequence