Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24895 and BWI76_RS24900 are separated by 110 nucleotides BWI76_RS24900 and BWI76_RS24905 are separated by 64 nucleotides
BWI76_RS24895: BWI76_RS24895 - galactitol-1-phosphate 5-dehydrogenase, at 5,187,513 to 5,188,556
_RS24895
BWI76_RS24900: BWI76_RS24900 - DeoR family transcriptional regulator, at 5,188,667 to 5,189,440
_RS24900
BWI76_RS24905: BWI76_RS24905 - filamentation induced by cAMP protein fic, at 5,189,505 to 5,190,506
_RS24905
Position (kb) 5188
5189
5190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5187.899 kb on - strand, within BWI76_RS24895 at 5188.147 kb on + strand, within BWI76_RS24895 at 5188.147 kb on + strand, within BWI76_RS24895 at 5188.286 kb on + strand, within BWI76_RS24895 at 5188.324 kb on - strand, within BWI76_RS24895 at 5188.389 kb on - strand, within BWI76_RS24895 at 5188.500 kb on + strand at 5188.674 kb on + strand at 5188.833 kb on + strand, within BWI76_RS24900 at 5188.991 kb on + strand, within BWI76_RS24900 at 5189.060 kb on + strand, within BWI76_RS24900 at 5189.135 kb on + strand, within BWI76_RS24900 at 5189.410 kb on - strand at 5189.450 kb on - strand at 5189.470 kb on + strand at 5189.620 kb on + strand, within BWI76_RS24905 at 5189.627 kb on - strand, within BWI76_RS24905 at 5189.830 kb on - strand, within BWI76_RS24905 at 5189.844 kb on - strand, within BWI76_RS24905 at 5189.921 kb on + strand, within BWI76_RS24905 at 5189.976 kb on + strand, within BWI76_RS24905 at 5189.994 kb on + strand, within BWI76_RS24905 at 5190.067 kb on + strand, within BWI76_RS24905 at 5190.123 kb on + strand, within BWI76_RS24905 at 5190.300 kb on - strand, within BWI76_RS24905 at 5190.344 kb on - strand, within BWI76_RS24905 at 5190.344 kb on - strand, within BWI76_RS24905 at 5190.406 kb on + strand at 5190.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,187,899 - BWI76_RS24895 0.37 +0.4 5,188,147 + BWI76_RS24895 0.61 +0.7 5,188,147 + BWI76_RS24895 0.61 -2.2 5,188,286 + BWI76_RS24895 0.74 -0.2 5,188,324 - BWI76_RS24895 0.78 -0.5 5,188,389 - BWI76_RS24895 0.84 -0.2 5,188,500 + +3.6 5,188,674 + -3.1 5,188,833 + BWI76_RS24900 0.21 -1.7 5,188,991 + BWI76_RS24900 0.42 +0.6 5,189,060 + BWI76_RS24900 0.51 -1.9 5,189,135 + BWI76_RS24900 0.60 +0.3 5,189,410 - -0.9 5,189,450 - -1.4 5,189,470 + -0.1 5,189,620 + BWI76_RS24905 0.11 +0.2 5,189,627 - BWI76_RS24905 0.12 -2.5 5,189,830 - BWI76_RS24905 0.32 +0.5 5,189,844 - BWI76_RS24905 0.34 +0.1 5,189,921 + BWI76_RS24905 0.42 +0.1 5,189,976 + BWI76_RS24905 0.47 +0.1 5,189,994 + BWI76_RS24905 0.49 -0.4 5,190,067 + BWI76_RS24905 0.56 -0.1 5,190,123 + BWI76_RS24905 0.62 +0.1 5,190,300 - BWI76_RS24905 0.79 -1.7 5,190,344 - BWI76_RS24905 0.84 -0.2 5,190,344 - BWI76_RS24905 0.84 -0.8 5,190,406 + +0.7 5,190,410 - -0.3
Or see this region's nucleotide sequence