Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23310

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23305 and BWI76_RS23310 are separated by 204 nucleotidesBWI76_RS23310 and BWI76_RS23315 overlap by 8 nucleotides BWI76_RS23305: BWI76_RS23305 - NADP(H)-dependent aldo-keto reductase, at 4,859,627 to 4,860,667 _RS23305 BWI76_RS23310: BWI76_RS23310 - lysophospholipid transporter LplT, at 4,860,872 to 4,862,065 _RS23310 BWI76_RS23315: BWI76_RS23315 - acyl-[ACP]--phospholipid O-acyltransferase, at 4,862,058 to 4,864,217 _RS23315 Position (kb) 4860 4861 4862 4863Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4859.880 kb on + strand, within BWI76_RS23305at 4860.275 kb on - strand, within BWI76_RS23305at 4860.418 kb on + strand, within BWI76_RS23305at 4861.022 kb on + strand, within BWI76_RS23310at 4861.061 kb on - strand, within BWI76_RS23310at 4861.395 kb on - strand, within BWI76_RS23310at 4861.515 kb on + strand, within BWI76_RS23310at 4861.614 kb on - strand, within BWI76_RS23310at 4861.778 kb on + strand, within BWI76_RS23310at 4861.806 kb on - strand, within BWI76_RS23310at 4862.132 kb on - strandat 4862.147 kb on - strandat 4862.682 kb on + strand, within BWI76_RS23315at 4862.897 kb on + strand, within BWI76_RS23315at 4862.915 kb on + strand, within BWI76_RS23315at 4862.957 kb on + strand, within BWI76_RS23315

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,859,880 + BWI76_RS23305 0.24 +4.0
4,860,275 - BWI76_RS23305 0.62 +0.3
4,860,418 + BWI76_RS23305 0.76 +0.8
4,861,022 + BWI76_RS23310 0.13 +1.5
4,861,061 - BWI76_RS23310 0.16 -1.0
4,861,395 - BWI76_RS23310 0.44 +0.3
4,861,515 + BWI76_RS23310 0.54 -0.2
4,861,614 - BWI76_RS23310 0.62 +0.1
4,861,778 + BWI76_RS23310 0.76 +0.6
4,861,806 - BWI76_RS23310 0.78 +0.1
4,862,132 - +0.9
4,862,147 - -0.3
4,862,682 + BWI76_RS23315 0.29 +0.5
4,862,897 + BWI76_RS23315 0.39 -1.9
4,862,915 + BWI76_RS23315 0.40 +2.2
4,862,957 + BWI76_RS23315 0.42 +0.0

Or see this region's nucleotide sequence