Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17390

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17385 and BWI76_RS17390 are separated by 68 nucleotidesBWI76_RS17390 and BWI76_RS17395 are separated by 238 nucleotidesBWI76_RS17395 and BWI76_RS17400 are separated by 35 nucleotides BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126 _RS17385 BWI76_RS17390: BWI76_RS17390 - DsrE family protein, at 3,609,195 to 3,609,548 _RS17390 BWI76_RS17395: BWI76_RS17395 - hypothetical protein, at 3,609,787 to 3,610,029 _RS17395 BWI76_RS17400: BWI76_RS17400 - transporter, at 3,610,065 to 3,610,745 _RS17400 Position (kb) 3609 3610Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3608.211 kb on + strand, within BWI76_RS17385at 3608.219 kb on - strand, within BWI76_RS17385at 3608.219 kb on - strand, within BWI76_RS17385at 3608.221 kb on - strand, within BWI76_RS17385at 3608.288 kb on + strand, within BWI76_RS17385at 3608.907 kb on + strand, within BWI76_RS17385at 3608.923 kb on + strand, within BWI76_RS17385at 3608.993 kb on + strand, within BWI76_RS17385at 3609.104 kb on - strandat 3609.104 kb on - strandat 3609.274 kb on + strand, within BWI76_RS17390at 3609.366 kb on + strand, within BWI76_RS17390at 3609.702 kb on + strandat 3609.702 kb on + strandat 3609.710 kb on - strandat 3610.493 kb on - strand, within BWI76_RS17400

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,608,211 + BWI76_RS17385 0.23 +1.2
3,608,219 - BWI76_RS17385 0.24 -1.9
3,608,219 - BWI76_RS17385 0.24 +4.5
3,608,221 - BWI76_RS17385 0.24 +0.5
3,608,288 + BWI76_RS17385 0.30 +0.1
3,608,907 + BWI76_RS17385 0.82 -0.4
3,608,923 + BWI76_RS17385 0.83 -0.6
3,608,993 + BWI76_RS17385 0.89 +0.1
3,609,104 - -1.5
3,609,104 - +0.4
3,609,274 + BWI76_RS17390 0.22 -2.8
3,609,366 + BWI76_RS17390 0.48 -0.7
3,609,702 + -1.0
3,609,702 + +0.4
3,609,710 - -0.0
3,610,493 - BWI76_RS17400 0.63 -0.3

Or see this region's nucleotide sequence