Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15525 and BWI76_RS15530 overlap by 14 nucleotides BWI76_RS15530 and BWI76_RS15535 overlap by 4 nucleotides BWI76_RS15535 and BWI76_RS15540 overlap by 1 nucleotides
BWI76_RS15525: BWI76_RS15525 - hypothetical protein, at 3,252,704 to 3,255,181
_RS15525
BWI76_RS15530: BWI76_RS15530 - hypothetical protein, at 3,255,168 to 3,255,563
_RS15530
BWI76_RS15535: BWI76_RS15535 - hypothetical protein, at 3,255,560 to 3,256,030
_RS15535
BWI76_RS15540: BWI76_RS15540 - hypothetical protein, at 3,256,030 to 3,256,506
_RS15540
Position (kb)
3255
3256 Strain fitness (log2 ratio)
-2
-1
0
1 at 3254.199 kb on - strand, within BWI76_RS15525 at 3254.204 kb on - strand, within BWI76_RS15525 at 3254.209 kb on - strand, within BWI76_RS15525 at 3254.622 kb on + strand, within BWI76_RS15525 at 3254.692 kb on + strand, within BWI76_RS15525 at 3254.700 kb on - strand, within BWI76_RS15525 at 3254.829 kb on + strand, within BWI76_RS15525 at 3255.017 kb on - strand at 3255.432 kb on + strand, within BWI76_RS15530 at 3255.517 kb on + strand at 3255.517 kb on + strand, within BWI76_RS15530 at 3255.525 kb on - strand at 3255.525 kb on - strand at 3255.555 kb on - strand at 3255.574 kb on + strand at 3255.574 kb on + strand at 3255.582 kb on - strand at 3255.582 kb on - strand at 3255.642 kb on - strand, within BWI76_RS15535 at 3255.854 kb on - strand, within BWI76_RS15535 at 3255.979 kb on + strand, within BWI76_RS15535 at 3255.987 kb on - strand at 3256.015 kb on + strand at 3256.131 kb on + strand, within BWI76_RS15540 at 3256.328 kb on + strand, within BWI76_RS15540 at 3256.375 kb on - strand, within BWI76_RS15540 at 3256.428 kb on + strand, within BWI76_RS15540 at 3256.433 kb on + strand, within BWI76_RS15540 at 3256.433 kb on + strand, within BWI76_RS15540 at 3256.441 kb on - strand, within BWI76_RS15540 at 3256.450 kb on + strand, within BWI76_RS15540
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,254,199 - BWI76_RS15525 0.60 -0.1 3,254,204 - BWI76_RS15525 0.61 +0.7 3,254,209 - BWI76_RS15525 0.61 +1.3 3,254,622 + BWI76_RS15525 0.77 -0.7 3,254,692 + BWI76_RS15525 0.80 -0.3 3,254,700 - BWI76_RS15525 0.81 +0.7 3,254,829 + BWI76_RS15525 0.86 -1.0 3,255,017 - -0.4 3,255,432 + BWI76_RS15530 0.67 -1.5 3,255,517 + +0.5 3,255,517 + BWI76_RS15530 0.88 -1.4 3,255,525 - -0.5 3,255,525 - -0.2 3,255,555 - -0.3 3,255,574 + +0.3 3,255,574 + -0.1 3,255,582 - +0.3 3,255,582 - -0.5 3,255,642 - BWI76_RS15535 0.17 -0.1 3,255,854 - BWI76_RS15535 0.62 +1.0 3,255,979 + BWI76_RS15535 0.89 +1.0 3,255,987 - -0.6 3,256,015 + +0.9 3,256,131 + BWI76_RS15540 0.21 -1.1 3,256,328 + BWI76_RS15540 0.62 -0.9 3,256,375 - BWI76_RS15540 0.72 -0.6 3,256,428 + BWI76_RS15540 0.83 -0.3 3,256,433 + BWI76_RS15540 0.84 -2.6 3,256,433 + BWI76_RS15540 0.84 -0.4 3,256,441 - BWI76_RS15540 0.86 -0.7 3,256,450 + BWI76_RS15540 0.88 -0.5
Or see this region's nucleotide sequence