Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14830

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14820 and BWI76_RS14825 are separated by 210 nucleotidesBWI76_RS14825 and BWI76_RS14830 overlap by 1 nucleotidesBWI76_RS14830 and BWI76_RS14835 are separated by 133 nucleotidesBWI76_RS14835 and BWI76_RS14840 are separated by 180 nucleotides BWI76_RS14820: BWI76_RS14820 - LysR family transcriptional regulator, at 3,105,614 to 3,106,522 _RS14820 BWI76_RS14825: BWI76_RS14825 - dienelactone hydrolase family protein, at 3,106,733 to 3,107,332 _RS14825 BWI76_RS14830: BWI76_RS14830 - hypothetical protein, at 3,107,332 to 3,107,904 _RS14830 BWI76_RS14835: BWI76_RS14835 - hypothetical protein, at 3,108,038 to 3,108,430 _RS14835 BWI76_RS14840: BWI76_RS14840 - hypothetical protein, at 3,108,611 to 3,109,213 _RS14840 Position (kb) 3107 3108Strain fitness (log2 ratio) -1 0 1at 3106.369 kb on + strand, within BWI76_RS14820at 3106.660 kb on - strandat 3106.674 kb on - strandat 3106.846 kb on - strand, within BWI76_RS14825at 3106.983 kb on + strand, within BWI76_RS14825at 3107.604 kb on - strand, within BWI76_RS14830at 3107.727 kb on - strand, within BWI76_RS14830at 3107.735 kb on + strand, within BWI76_RS14830at 3107.821 kb on + strand, within BWI76_RS14830at 3108.022 kb on + strandat 3108.130 kb on - strand, within BWI76_RS14835at 3108.356 kb on + strand, within BWI76_RS14835at 3108.425 kb on + strandat 3108.594 kb on - strandat 3108.726 kb on - strand, within BWI76_RS14840at 3108.847 kb on - strand, within BWI76_RS14840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
3,106,369 + BWI76_RS14820 0.83 -0.9
3,106,660 - -0.5
3,106,674 - -0.1
3,106,846 - BWI76_RS14825 0.19 +0.3
3,106,983 + BWI76_RS14825 0.42 +1.5
3,107,604 - BWI76_RS14830 0.47 -1.4
3,107,727 - BWI76_RS14830 0.69 -0.5
3,107,735 + BWI76_RS14830 0.70 -0.9
3,107,821 + BWI76_RS14830 0.85 -1.1
3,108,022 + -1.5
3,108,130 - BWI76_RS14835 0.23 -0.6
3,108,356 + BWI76_RS14835 0.81 -0.4
3,108,425 + -0.1
3,108,594 - +0.1
3,108,726 - BWI76_RS14840 0.19 -0.5
3,108,847 - BWI76_RS14840 0.39 -0.3

Or see this region's nucleotide sequence