Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14790 and BWI76_RS14795 are separated by 146 nucleotides BWI76_RS14795 and BWI76_RS14800 are separated by 45 nucleotides BWI76_RS14800 and BWI76_RS14805 are separated by 302 nucleotides BWI76_RS14805 and BWI76_RS14810 are separated by 4 nucleotides
BWI76_RS14790: BWI76_RS14790 - 2-dehydropantoate 2-reductase, at 3,101,209 to 3,102,102
_RS14790
BWI76_RS14795: BWI76_RS14795 - hypothetical protein, at 3,102,249 to 3,102,473
_RS14795
BWI76_RS14800: BWI76_RS14800 - non-heme chloroperoxidase, at 3,102,519 to 3,103,355
_RS14800
BWI76_RS14805: BWI76_RS14805 - hypothetical protein, at 3,103,658 to 3,104,092
_RS14805
BWI76_RS14810: BWI76_RS14810 - carboxymuconolactone decarboxylase, at 3,104,097 to 3,104,897
_RS14810
Position (kb)
3102
3103
3104 Strain fitness (log2 ratio)
-1
0
1 at 3101.607 kb on + strand, within BWI76_RS14790 at 3102.083 kb on - strand at 3102.467 kb on + strand at 3102.467 kb on + strand at 3102.832 kb on - strand, within BWI76_RS14800 at 3102.995 kb on - strand, within BWI76_RS14800 at 3103.092 kb on - strand, within BWI76_RS14800 at 3103.173 kb on + strand, within BWI76_RS14800 at 3103.295 kb on + strand at 3103.430 kb on + strand at 3103.595 kb on - strand at 3103.841 kb on + strand, within BWI76_RS14805 at 3103.955 kb on + strand, within BWI76_RS14805 at 3104.076 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 3,101,607 + BWI76_RS14790 0.45 -0.9 3,102,083 - +0.2 3,102,467 + +0.1 3,102,467 + +0.6 3,102,832 - BWI76_RS14800 0.37 -0.8 3,102,995 - BWI76_RS14800 0.57 -0.4 3,103,092 - BWI76_RS14800 0.68 -0.5 3,103,173 + BWI76_RS14800 0.78 -0.2 3,103,295 + -0.4 3,103,430 + -0.5 3,103,595 - -0.4 3,103,841 + BWI76_RS14805 0.42 -0.7 3,103,955 + BWI76_RS14805 0.68 -1.1 3,104,076 - +0.5
Or see this region's nucleotide sequence