Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14795

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14790 and BWI76_RS14795 are separated by 146 nucleotidesBWI76_RS14795 and BWI76_RS14800 are separated by 45 nucleotides BWI76_RS14790: BWI76_RS14790 - 2-dehydropantoate 2-reductase, at 3,101,209 to 3,102,102 _RS14790 BWI76_RS14795: BWI76_RS14795 - hypothetical protein, at 3,102,249 to 3,102,473 _RS14795 BWI76_RS14800: BWI76_RS14800 - non-heme chloroperoxidase, at 3,102,519 to 3,103,355 _RS14800 Position (kb) 3102 3103Strain fitness (log2 ratio) -1 0 1at 3101.321 kb on - strandat 3101.463 kb on + strand, within BWI76_RS14790at 3101.607 kb on + strand, within BWI76_RS14790at 3102.083 kb on - strandat 3102.467 kb on + strandat 3102.467 kb on + strandat 3102.832 kb on - strand, within BWI76_RS14800at 3102.995 kb on - strand, within BWI76_RS14800at 3103.092 kb on - strand, within BWI76_RS14800at 3103.173 kb on + strand, within BWI76_RS14800at 3103.295 kb on + strandat 3103.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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3,101,321 - -0.7
3,101,463 + BWI76_RS14790 0.28 +1.2
3,101,607 + BWI76_RS14790 0.45 -0.9
3,102,083 - +0.2
3,102,467 + +0.1
3,102,467 + +0.6
3,102,832 - BWI76_RS14800 0.37 -0.8
3,102,995 - BWI76_RS14800 0.57 -0.4
3,103,092 - BWI76_RS14800 0.68 -0.5
3,103,173 + BWI76_RS14800 0.78 -0.2
3,103,295 + -0.4
3,103,430 + -0.5

Or see this region's nucleotide sequence