Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12485

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12480 and BWI76_RS12485 are separated by 244 nucleotidesBWI76_RS12485 and BWI76_RS12490 are separated by 116 nucleotides BWI76_RS12480: BWI76_RS12480 - TIGR01620 family protein, at 2,606,057 to 2,607,118 _RS12480 BWI76_RS12485: BWI76_RS12485 - TyrR family transcriptional regulator, at 2,607,363 to 2,608,904 _RS12485 BWI76_RS12490: BWI76_RS12490 - AbrB family transcriptional regulator, at 2,609,021 to 2,610,076 _RS12490 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 2606.447 kb on - strand, within BWI76_RS12480at 2606.567 kb on + strand, within BWI76_RS12480at 2606.585 kb on - strand, within BWI76_RS12480at 2606.804 kb on - strand, within BWI76_RS12480at 2606.925 kb on + strand, within BWI76_RS12480at 2607.146 kb on + strandat 2607.149 kb on - strandat 2607.351 kb on - strandat 2608.100 kb on - strand, within BWI76_RS12485at 2608.657 kb on + strand, within BWI76_RS12485at 2608.657 kb on + strand, within BWI76_RS12485at 2608.820 kb on + strandat 2608.855 kb on + strandat 2608.863 kb on - strandat 2608.878 kb on - strandat 2609.419 kb on + strand, within BWI76_RS12490at 2609.567 kb on - strand, within BWI76_RS12490at 2609.661 kb on + strand, within BWI76_RS12490at 2609.745 kb on - strand, within BWI76_RS12490

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,606,447 - BWI76_RS12480 0.37 +0.6
2,606,567 + BWI76_RS12480 0.48 -2.1
2,606,585 - BWI76_RS12480 0.50 +0.3
2,606,804 - BWI76_RS12480 0.70 +1.3
2,606,925 + BWI76_RS12480 0.82 -1.6
2,607,146 + -1.0
2,607,149 - -0.8
2,607,351 - -2.2
2,608,100 - BWI76_RS12485 0.48 -2.7
2,608,657 + BWI76_RS12485 0.84 -1.9
2,608,657 + BWI76_RS12485 0.84 +0.0
2,608,820 + -2.9
2,608,855 + -2.8
2,608,863 - -3.3
2,608,878 - +8.4
2,609,419 + BWI76_RS12490 0.38 -0.4
2,609,567 - BWI76_RS12490 0.52 +0.6
2,609,661 + BWI76_RS12490 0.61 -0.2
2,609,745 - BWI76_RS12490 0.69 -0.0

Or see this region's nucleotide sequence