Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11770

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11765 and BWI76_RS11770 are separated by 134 nucleotidesBWI76_RS11770 and BWI76_RS11775 are separated by 91 nucleotides BWI76_RS11765: BWI76_RS11765 - bifunctional transporter/kinase, at 2,475,327 to 2,476,718 _RS11765 BWI76_RS11770: BWI76_RS11770 - hypothetical protein, at 2,476,853 to 2,477,443 _RS11770 BWI76_RS11775: BWI76_RS11775 - 2-deoxy-D-gluconate 3-dehydrogenase, at 2,477,535 to 2,478,296 _RS11775 Position (kb) 2476 2477 2478Strain fitness (log2 ratio) -2 -1 0 1 2at 2475.854 kb on + strand, within BWI76_RS11765at 2476.002 kb on + strand, within BWI76_RS11765at 2476.055 kb on - strand, within BWI76_RS11765at 2476.239 kb on - strand, within BWI76_RS11765at 2476.273 kb on + strand, within BWI76_RS11765at 2476.338 kb on + strand, within BWI76_RS11765at 2476.356 kb on - strand, within BWI76_RS11765at 2476.395 kb on - strand, within BWI76_RS11765at 2476.532 kb on + strand, within BWI76_RS11765at 2476.638 kb on + strandat 2476.643 kb on - strandat 2476.937 kb on + strand, within BWI76_RS11770at 2476.976 kb on - strand, within BWI76_RS11770at 2477.275 kb on - strand, within BWI76_RS11770at 2477.451 kb on + strandat 2477.575 kb on - strandat 2477.628 kb on - strand, within BWI76_RS11775at 2477.829 kb on - strand, within BWI76_RS11775at 2478.275 kb on + strandat 2478.283 kb on - strandat 2478.340 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,475,854 + BWI76_RS11765 0.38 -0.7
2,476,002 + BWI76_RS11765 0.48 +0.4
2,476,055 - BWI76_RS11765 0.52 -0.4
2,476,239 - BWI76_RS11765 0.66 -0.4
2,476,273 + BWI76_RS11765 0.68 +0.6
2,476,338 + BWI76_RS11765 0.73 -0.2
2,476,356 - BWI76_RS11765 0.74 +0.1
2,476,395 - BWI76_RS11765 0.77 +1.0
2,476,532 + BWI76_RS11765 0.87 +0.6
2,476,638 + +0.3
2,476,643 - +0.1
2,476,937 + BWI76_RS11770 0.14 -0.8
2,476,976 - BWI76_RS11770 0.21 -1.2
2,477,275 - BWI76_RS11770 0.71 -1.2
2,477,451 + +1.8
2,477,575 - -2.2
2,477,628 - BWI76_RS11775 0.12 -0.1
2,477,829 - BWI76_RS11775 0.39 -1.4
2,478,275 + -1.5
2,478,283 - -1.0
2,478,340 + +0.3

Or see this region's nucleotide sequence