Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09370 and BWI76_RS09375 are separated by 52 nucleotides BWI76_RS09375 and BWI76_RS09380 are separated by 14 nucleotides BWI76_RS09380 and BWI76_RS09385 overlap by 8 nucleotides BWI76_RS09385 and BWI76_RS09390 overlap by 4 nucleotides BWI76_RS09390 and BWI76_RS09395 overlap by 4 nucleotides
BWI76_RS09370: BWI76_RS09370 - major tail tube protein, at 1,966,670 to 1,967,185
_RS09370
BWI76_RS09375: BWI76_RS09375 - phage tail protein, at 1,967,238 to 1,967,537
_RS09375
BWI76_RS09380: BWI76_RS09380 - GpE family phage tail protein, at 1,967,552 to 1,967,671
_RS09380
BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291
_RS09385
BWI76_RS09390: BWI76_RS09390 - phage tail protein, at 1,970,288 to 1,970,773
_RS09390
BWI76_RS09395: BWI76_RS09395 - late control gene D protein, at 1,970,770 to 1,971,855
_RS09395
Position (kb) 1967
1968
1969
1970
1971 Strain fitness (log2 ratio) -1
0
1
2 at 1966.667 kb on + strand at 1966.667 kb on + strand at 1967.185 kb on + strand at 1967.347 kb on + strand, within BWI76_RS09375 at 1967.482 kb on + strand, within BWI76_RS09375 at 1967.746 kb on + strand at 1968.142 kb on - strand, within BWI76_RS09385 at 1968.321 kb on + strand, within BWI76_RS09385 at 1968.606 kb on + strand, within BWI76_RS09385 at 1968.613 kb on - strand, within BWI76_RS09385 at 1969.478 kb on - strand, within BWI76_RS09385 at 1969.623 kb on - strand, within BWI76_RS09385 at 1969.623 kb on - strand, within BWI76_RS09385 at 1969.717 kb on - strand, within BWI76_RS09385 at 1970.375 kb on + strand, within BWI76_RS09390 at 1970.560 kb on - strand, within BWI76_RS09390 at 1970.642 kb on + strand, within BWI76_RS09390 at 1970.698 kb on + strand, within BWI76_RS09390 at 1970.770 kb on - strand at 1970.812 kb on + strand at 1971.182 kb on + strand, within BWI76_RS09395 at 1971.190 kb on - strand, within BWI76_RS09395
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,966,667 + +0.8 1,966,667 + -0.2 1,967,185 + +0.0 1,967,347 + BWI76_RS09375 0.36 -0.0 1,967,482 + BWI76_RS09375 0.81 +0.5 1,967,746 + +0.2 1,968,142 - BWI76_RS09385 0.18 +0.9 1,968,321 + BWI76_RS09385 0.25 +0.9 1,968,606 + BWI76_RS09385 0.36 +2.0 1,968,613 - BWI76_RS09385 0.36 +0.0 1,969,478 - BWI76_RS09385 0.69 -0.8 1,969,623 - BWI76_RS09385 0.75 -0.4 1,969,623 - BWI76_RS09385 0.75 +1.2 1,969,717 - BWI76_RS09385 0.78 -0.4 1,970,375 + BWI76_RS09390 0.18 -0.3 1,970,560 - BWI76_RS09390 0.56 -0.9 1,970,642 + BWI76_RS09390 0.73 -0.3 1,970,698 + BWI76_RS09390 0.84 -1.7 1,970,770 - +0.1 1,970,812 + +1.3 1,971,182 + BWI76_RS09395 0.38 +0.4 1,971,190 - BWI76_RS09395 0.39 +1.3
Or see this region's nucleotide sequence