Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07835

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07830 and BWI76_RS07835 are separated by 25 nucleotidesBWI76_RS07835 and BWI76_RS07840 are separated by 107 nucleotides BWI76_RS07830: BWI76_RS07830 - 3-phytase, at 1,660,321 to 1,661,589 _RS07830 BWI76_RS07835: BWI76_RS07835 - MFS transporter, at 1,661,615 to 1,662,976 _RS07835 BWI76_RS07840: BWI76_RS07840 - inositol monophosphatase family protein, at 1,663,084 to 1,663,893 _RS07840 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -1 0 1at 1660.733 kb on + strand, within BWI76_RS07830at 1661.173 kb on - strand, within BWI76_RS07830at 1661.307 kb on + strand, within BWI76_RS07830at 1661.515 kb on + strandat 1661.606 kb on + strandat 1662.003 kb on + strand, within BWI76_RS07835at 1662.003 kb on + strand, within BWI76_RS07835at 1662.013 kb on - strand, within BWI76_RS07835at 1662.147 kb on + strand, within BWI76_RS07835at 1662.681 kb on - strand, within BWI76_RS07835at 1662.873 kb on + strandat 1663.016 kb on - strandat 1663.062 kb on + strandat 1663.379 kb on + strand, within BWI76_RS07840at 1663.392 kb on + strand, within BWI76_RS07840at 1663.521 kb on - strand, within BWI76_RS07840at 1663.652 kb on + strand, within BWI76_RS07840

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,660,733 + BWI76_RS07830 0.32 -0.8
1,661,173 - BWI76_RS07830 0.67 -1.0
1,661,307 + BWI76_RS07830 0.78 -0.1
1,661,515 + +0.6
1,661,606 + -1.0
1,662,003 + BWI76_RS07835 0.28 -0.5
1,662,003 + BWI76_RS07835 0.28 -0.2
1,662,013 - BWI76_RS07835 0.29 -0.2
1,662,147 + BWI76_RS07835 0.39 -0.7
1,662,681 - BWI76_RS07835 0.78 -0.3
1,662,873 + +0.3
1,663,016 - +0.2
1,663,062 + -1.3
1,663,379 + BWI76_RS07840 0.36 -0.3
1,663,392 + BWI76_RS07840 0.38 -0.6
1,663,521 - BWI76_RS07840 0.54 +0.9
1,663,652 + BWI76_RS07840 0.70 +0.4

Or see this region's nucleotide sequence