Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06625 and BWI76_RS06630 are separated by 220 nucleotides BWI76_RS06630 and BWI76_RS06635 are separated by 37 nucleotides BWI76_RS06635 and BWI76_RS06640 are separated by 65 nucleotides
BWI76_RS06625: BWI76_RS06625 - acyl-CoA thioesterase II, at 1,392,936 to 1,393,811
_RS06625
BWI76_RS06630: BWI76_RS06630 - hypothetical protein, at 1,394,032 to 1,394,541
_RS06630
BWI76_RS06635: BWI76_RS06635 - methylated-DNA--protein-cysteine methyltransferase, at 1,394,579 to 1,394,890
_RS06635
BWI76_RS06640: BWI76_RS06640 - hypothetical protein, at 1,394,956 to 1,395,363
_RS06640
Position (kb) 1394
1395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1393.079 kb on - strand, within BWI76_RS06625 at 1393.191 kb on - strand, within BWI76_RS06625 at 1393.266 kb on + strand, within BWI76_RS06625 at 1393.492 kb on - strand, within BWI76_RS06625 at 1393.667 kb on + strand, within BWI76_RS06625 at 1393.675 kb on - strand, within BWI76_RS06625 at 1393.811 kb on + strand at 1393.871 kb on - strand at 1393.872 kb on - strand at 1393.934 kb on + strand at 1393.944 kb on + strand at 1393.992 kb on + strand at 1394.151 kb on + strand, within BWI76_RS06630 at 1394.325 kb on + strand, within BWI76_RS06630 at 1394.387 kb on + strand, within BWI76_RS06630 at 1394.439 kb on - strand, within BWI76_RS06630 at 1394.531 kb on - strand at 1394.627 kb on + strand, within BWI76_RS06635 at 1394.735 kb on + strand, within BWI76_RS06635 at 1394.744 kb on - strand, within BWI76_RS06635 at 1395.082 kb on - strand, within BWI76_RS06640 at 1395.101 kb on + strand, within BWI76_RS06640 at 1395.192 kb on + strand, within BWI76_RS06640 at 1395.192 kb on + strand, within BWI76_RS06640 at 1395.197 kb on + strand, within BWI76_RS06640 at 1395.197 kb on + strand, within BWI76_RS06640 at 1395.210 kb on - strand, within BWI76_RS06640 at 1395.224 kb on - strand, within BWI76_RS06640 at 1395.328 kb on + strand at 1395.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,393,079 - BWI76_RS06625 0.16 -0.2 1,393,191 - BWI76_RS06625 0.29 +0.7 1,393,266 + BWI76_RS06625 0.38 +1.0 1,393,492 - BWI76_RS06625 0.63 -0.9 1,393,667 + BWI76_RS06625 0.83 -0.5 1,393,675 - BWI76_RS06625 0.84 +0.4 1,393,811 + -0.0 1,393,871 - -0.5 1,393,872 - -0.6 1,393,934 + +0.8 1,393,944 + +0.6 1,393,992 + +0.3 1,394,151 + BWI76_RS06630 0.23 -0.2 1,394,325 + BWI76_RS06630 0.57 -1.4 1,394,387 + BWI76_RS06630 0.70 -0.9 1,394,439 - BWI76_RS06630 0.80 -3.3 1,394,531 - -0.2 1,394,627 + BWI76_RS06635 0.15 -0.6 1,394,735 + BWI76_RS06635 0.50 -0.1 1,394,744 - BWI76_RS06635 0.53 -1.0 1,395,082 - BWI76_RS06640 0.31 -0.5 1,395,101 + BWI76_RS06640 0.36 -1.5 1,395,192 + BWI76_RS06640 0.58 -0.4 1,395,192 + BWI76_RS06640 0.58 +0.4 1,395,197 + BWI76_RS06640 0.59 +0.6 1,395,197 + BWI76_RS06640 0.59 +0.0 1,395,210 - BWI76_RS06640 0.62 +0.3 1,395,224 - BWI76_RS06640 0.66 -0.1 1,395,328 + +0.6 1,395,336 - -1.8
Or see this region's nucleotide sequence