Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06535 and BWI76_RS06540 are separated by 208 nucleotides BWI76_RS06540 and BWI76_RS06545 are separated by 213 nucleotides BWI76_RS06545 and BWI76_RS06550 are separated by 148 nucleotides BWI76_RS06550 and BWI76_RS06555 are separated by 110 nucleotides
BWI76_RS06535: BWI76_RS06535 - endopeptidase La, at 1,372,701 to 1,375,055
_RS06535
BWI76_RS06540: BWI76_RS06540 - DNA-binding protein HU-beta, at 1,375,264 to 1,375,536
_RS06540
BWI76_RS06545: BWI76_RS06545 - peptidylprolyl isomerase, at 1,375,750 to 1,377,624
_RS06545
BWI76_RS06550: BWI76_RS06550 - competence protein ComEA, at 1,377,773 to 1,378,138
_RS06550
BWI76_RS06555: BWI76_RS06555 - thioesterase superfamily protein, at 1,378,249 to 1,378,650
_RS06555
Position (kb)
1375
1376
1377
1378 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1374.890 kb on + strand at 1374.898 kb on - strand at 1375.143 kb on - strand at 1375.165 kb on + strand at 1375.166 kb on - strand at 1375.170 kb on + strand at 1375.173 kb on - strand at 1375.177 kb on + strand at 1375.199 kb on + strand at 1375.222 kb on + strand at 1375.425 kb on - strand, within BWI76_RS06540 at 1375.507 kb on + strand, within BWI76_RS06540 at 1375.636 kb on + strand at 1375.636 kb on + strand at 1375.836 kb on + strand at 1376.020 kb on + strand, within BWI76_RS06545 at 1376.095 kb on - strand, within BWI76_RS06545 at 1376.234 kb on - strand, within BWI76_RS06545 at 1376.429 kb on + strand, within BWI76_RS06545 at 1376.692 kb on - strand, within BWI76_RS06545 at 1376.720 kb on + strand, within BWI76_RS06545 at 1376.829 kb on + strand at 1377.238 kb on - strand, within BWI76_RS06545 at 1377.660 kb on - strand at 1377.806 kb on + strand at 1377.819 kb on - strand, within BWI76_RS06550 at 1377.918 kb on + strand, within BWI76_RS06550 at 1378.025 kb on + strand, within BWI76_RS06550 at 1378.079 kb on - strand, within BWI76_RS06550
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,374,890 + -1.6 1,374,898 - +0.6 1,375,143 - +1.5 1,375,165 + +0.7 1,375,166 - +1.2 1,375,170 + +0.1 1,375,173 - -0.2 1,375,177 + -0.9 1,375,199 + +3.2 1,375,222 + +0.5 1,375,425 - BWI76_RS06540 0.59 +1.1 1,375,507 + BWI76_RS06540 0.89 -0.5 1,375,636 + +1.2 1,375,636 + +0.2 1,375,836 + +0.2 1,376,020 + BWI76_RS06545 0.14 -0.5 1,376,095 - BWI76_RS06545 0.18 +1.8 1,376,234 - BWI76_RS06545 0.26 +0.1 1,376,429 + BWI76_RS06545 0.36 -0.6 1,376,692 - BWI76_RS06545 0.50 -1.2 1,376,720 + BWI76_RS06545 0.52 +1.0 1,376,829 + +0.8 1,377,238 - BWI76_RS06545 0.79 -1.8 1,377,660 - -0.7 1,377,806 + -0.3 1,377,819 - BWI76_RS06550 0.13 -0.4 1,377,918 + BWI76_RS06550 0.40 +0.4 1,378,025 + BWI76_RS06550 0.69 +0.2 1,378,079 - BWI76_RS06550 0.84 -0.7
Or see this region's nucleotide sequence