Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06545

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06535 and BWI76_RS06540 are separated by 208 nucleotidesBWI76_RS06540 and BWI76_RS06545 are separated by 213 nucleotidesBWI76_RS06545 and BWI76_RS06550 are separated by 148 nucleotidesBWI76_RS06550 and BWI76_RS06555 are separated by 110 nucleotides BWI76_RS06535: BWI76_RS06535 - endopeptidase La, at 1,372,701 to 1,375,055 _RS06535 BWI76_RS06540: BWI76_RS06540 - DNA-binding protein HU-beta, at 1,375,264 to 1,375,536 _RS06540 BWI76_RS06545: BWI76_RS06545 - peptidylprolyl isomerase, at 1,375,750 to 1,377,624 _RS06545 BWI76_RS06550: BWI76_RS06550 - competence protein ComEA, at 1,377,773 to 1,378,138 _RS06550 BWI76_RS06555: BWI76_RS06555 - thioesterase superfamily protein, at 1,378,249 to 1,378,650 _RS06555 Position (kb) 1375 1376 1377 1378Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1374.890 kb on + strandat 1374.898 kb on - strandat 1375.143 kb on - strandat 1375.165 kb on + strandat 1375.166 kb on - strandat 1375.170 kb on + strandat 1375.173 kb on - strandat 1375.177 kb on + strandat 1375.199 kb on + strandat 1375.222 kb on + strandat 1375.425 kb on - strand, within BWI76_RS06540at 1375.507 kb on + strand, within BWI76_RS06540at 1375.636 kb on + strandat 1375.636 kb on + strandat 1375.836 kb on + strandat 1376.020 kb on + strand, within BWI76_RS06545at 1376.095 kb on - strand, within BWI76_RS06545at 1376.234 kb on - strand, within BWI76_RS06545at 1376.429 kb on + strand, within BWI76_RS06545at 1376.692 kb on - strand, within BWI76_RS06545at 1376.720 kb on + strand, within BWI76_RS06545at 1376.829 kb on + strandat 1377.238 kb on - strand, within BWI76_RS06545at 1377.660 kb on - strandat 1377.806 kb on + strandat 1377.819 kb on - strand, within BWI76_RS06550at 1377.918 kb on + strand, within BWI76_RS06550at 1378.025 kb on + strand, within BWI76_RS06550at 1378.079 kb on - strand, within BWI76_RS06550

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,374,890 + -1.6
1,374,898 - +0.6
1,375,143 - +1.5
1,375,165 + +0.7
1,375,166 - +1.2
1,375,170 + +0.1
1,375,173 - -0.2
1,375,177 + -0.9
1,375,199 + +3.2
1,375,222 + +0.5
1,375,425 - BWI76_RS06540 0.59 +1.1
1,375,507 + BWI76_RS06540 0.89 -0.5
1,375,636 + +1.2
1,375,636 + +0.2
1,375,836 + +0.2
1,376,020 + BWI76_RS06545 0.14 -0.5
1,376,095 - BWI76_RS06545 0.18 +1.8
1,376,234 - BWI76_RS06545 0.26 +0.1
1,376,429 + BWI76_RS06545 0.36 -0.6
1,376,692 - BWI76_RS06545 0.50 -1.2
1,376,720 + BWI76_RS06545 0.52 +1.0
1,376,829 + +0.8
1,377,238 - BWI76_RS06545 0.79 -1.8
1,377,660 - -0.7
1,377,806 + -0.3
1,377,819 - BWI76_RS06550 0.13 -0.4
1,377,918 + BWI76_RS06550 0.40 +0.4
1,378,025 + BWI76_RS06550 0.69 +0.2
1,378,079 - BWI76_RS06550 0.84 -0.7

Or see this region's nucleotide sequence