Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04270 and BWI76_RS04275 are separated by 99 nucleotides BWI76_RS04275 and BWI76_RS04280 are separated by 120 nucleotides
BWI76_RS04270: BWI76_RS04270 - transaldolase, at 879,739 to 880,692
_RS04270
BWI76_RS04275: BWI76_RS04275 - molybdopterin adenylyltransferase, at 880,792 to 881,379
_RS04275
BWI76_RS04280: BWI76_RS04280 - MFS transporter, at 881,500 to 882,810
_RS04280
Position (kb) 880
881
882 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 879.873 kb on - strand, within BWI76_RS04270 at 880.036 kb on + strand, within BWI76_RS04270 at 880.041 kb on + strand, within BWI76_RS04270 at 880.202 kb on - strand, within BWI76_RS04270 at 880.446 kb on + strand, within BWI76_RS04270 at 880.516 kb on - strand, within BWI76_RS04270 at 880.517 kb on + strand, within BWI76_RS04270 at 880.729 kb on - strand at 880.729 kb on - strand at 880.735 kb on + strand at 880.854 kb on + strand, within BWI76_RS04275 at 880.862 kb on - strand at 880.890 kb on - strand, within BWI76_RS04275 at 880.899 kb on + strand, within BWI76_RS04275 at 880.899 kb on + strand, within BWI76_RS04275 at 880.944 kb on + strand, within BWI76_RS04275 at 880.944 kb on + strand, within BWI76_RS04275 at 881.101 kb on + strand, within BWI76_RS04275 at 881.177 kb on + strand, within BWI76_RS04275 at 881.177 kb on + strand, within BWI76_RS04275 at 881.185 kb on - strand, within BWI76_RS04275 at 881.215 kb on + strand, within BWI76_RS04275 at 881.508 kb on - strand at 881.704 kb on - strand, within BWI76_RS04280 at 881.872 kb on + strand, within BWI76_RS04280 at 882.024 kb on + strand, within BWI76_RS04280 at 882.032 kb on - strand, within BWI76_RS04280 at 882.032 kb on - strand, within BWI76_RS04280 at 882.050 kb on + strand, within BWI76_RS04280 at 882.192 kb on + strand, within BWI76_RS04280 at 882.343 kb on - strand, within BWI76_RS04280
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 879,873 - BWI76_RS04270 0.14 -0.8 880,036 + BWI76_RS04270 0.31 -1.0 880,041 + BWI76_RS04270 0.32 +0.8 880,202 - BWI76_RS04270 0.49 -1.8 880,446 + BWI76_RS04270 0.74 +1.7 880,516 - BWI76_RS04270 0.81 +1.6 880,517 + BWI76_RS04270 0.82 -0.4 880,729 - +0.2 880,729 - -0.6 880,735 + -1.6 880,854 + BWI76_RS04275 0.11 +2.6 880,862 - +4.4 880,890 - BWI76_RS04275 0.17 +1.8 880,899 + BWI76_RS04275 0.18 -0.7 880,899 + BWI76_RS04275 0.18 +2.3 880,944 + BWI76_RS04275 0.26 +2.1 880,944 + BWI76_RS04275 0.26 +1.3 881,101 + BWI76_RS04275 0.53 +1.4 881,177 + BWI76_RS04275 0.65 +0.7 881,177 + BWI76_RS04275 0.65 +0.9 881,185 - BWI76_RS04275 0.67 +1.8 881,215 + BWI76_RS04275 0.72 +1.4 881,508 - -0.1 881,704 - BWI76_RS04280 0.16 -1.0 881,872 + BWI76_RS04280 0.28 -0.3 882,024 + BWI76_RS04280 0.40 -0.3 882,032 - BWI76_RS04280 0.41 -1.7 882,032 - BWI76_RS04280 0.41 -0.3 882,050 + BWI76_RS04280 0.42 -0.2 882,192 + BWI76_RS04280 0.53 +0.1 882,343 - BWI76_RS04280 0.64 -0.4
Or see this region's nucleotide sequence