Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03900 and BWI76_RS03905 overlap by 4 nucleotides BWI76_RS03905 and BWI76_RS03910 overlap by 14 nucleotides BWI76_RS03910 and BWI76_RS03915 overlap by 4 nucleotides BWI76_RS03915 and BWI76_RS03920 are separated by 70 nucleotides
BWI76_RS03900: BWI76_RS03900 - Na+/proline symporter, at 806,232 to 807,719
_RS03900
BWI76_RS03905: BWI76_RS03905 - 2-oxo-3-deoxygalactonate kinase, at 807,716 to 808,588
_RS03905
BWI76_RS03910: BWI76_RS03910 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 808,575 to 809,177
_RS03910
BWI76_RS03915: BWI76_RS03915 - MurR/RpiR family transcriptional regulator, at 809,174 to 810,037
_RS03915
BWI76_RS03920: BWI76_RS03920 - N-acetyltransferase, at 810,108 to 810,641
_RS03920
Position (kb) 808
809
810 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 807.698 kb on + strand at 807.706 kb on - strand at 807.747 kb on + strand at 807.755 kb on - strand at 807.859 kb on + strand, within BWI76_RS03905 at 807.951 kb on - strand, within BWI76_RS03905 at 807.983 kb on - strand, within BWI76_RS03905 at 808.000 kb on + strand, within BWI76_RS03905 at 808.008 kb on - strand, within BWI76_RS03905 at 808.114 kb on + strand, within BWI76_RS03905 at 808.122 kb on - strand at 808.146 kb on - strand, within BWI76_RS03905 at 808.314 kb on - strand, within BWI76_RS03905 at 808.451 kb on - strand, within BWI76_RS03905 at 808.503 kb on - strand at 808.582 kb on + strand at 808.774 kb on - strand, within BWI76_RS03910 at 808.779 kb on - strand, within BWI76_RS03910 at 809.235 kb on - strand at 809.333 kb on - strand at 809.380 kb on - strand, within BWI76_RS03915 at 809.384 kb on - strand, within BWI76_RS03915 at 809.484 kb on + strand, within BWI76_RS03915 at 809.656 kb on - strand, within BWI76_RS03915 at 809.718 kb on + strand, within BWI76_RS03915 at 809.768 kb on - strand, within BWI76_RS03915 at 809.998 kb on + strand at 810.120 kb on + strand at 810.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 807,698 + -0.0 807,706 - +5.4 807,747 + -0.1 807,755 - +0.1 807,859 + BWI76_RS03905 0.16 -0.1 807,951 - BWI76_RS03905 0.27 +0.7 807,983 - BWI76_RS03905 0.31 +0.2 808,000 + BWI76_RS03905 0.33 -0.1 808,008 - BWI76_RS03905 0.33 +0.1 808,114 + BWI76_RS03905 0.46 +0.1 808,122 - +1.5 808,146 - BWI76_RS03905 0.49 -0.9 808,314 - BWI76_RS03905 0.68 -0.1 808,451 - BWI76_RS03905 0.84 +0.1 808,503 - +0.1 808,582 + +0.0 808,774 - BWI76_RS03910 0.33 -1.0 808,779 - BWI76_RS03910 0.34 -1.4 809,235 - +1.6 809,333 - +0.2 809,380 - BWI76_RS03915 0.24 -0.4 809,384 - BWI76_RS03915 0.24 +0.7 809,484 + BWI76_RS03915 0.36 +4.0 809,656 - BWI76_RS03915 0.56 +0.1 809,718 + BWI76_RS03915 0.63 +0.5 809,768 - BWI76_RS03915 0.69 -0.5 809,998 + -0.5 810,120 + -0.1 810,158 - +0.9
Or see this region's nucleotide sequence