Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03080 and BWI76_RS03085 are separated by 151 nucleotides BWI76_RS03085 and BWI76_RS03090 are separated by 526 nucleotides
BWI76_RS03080: BWI76_RS03080 - (Fe-S)-cluster assembly protein, at 631,730 to 632,587
_RS03080
BWI76_RS03085: BWI76_RS03085 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) <small>(from data)</small>, at 632,739 to 634,652
_RS03085
BWI76_RS03090: BWI76_RS03090 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 635,179 to 637,119
_RS03090
Position (kb) 632
633
634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 631.852 kb on + strand, within BWI76_RS03080 at 631.860 kb on - strand, within BWI76_RS03080 at 631.932 kb on + strand, within BWI76_RS03080 at 632.081 kb on - strand, within BWI76_RS03080 at 632.086 kb on - strand, within BWI76_RS03080 at 632.231 kb on - strand, within BWI76_RS03080 at 632.591 kb on - strand at 632.629 kb on - strand at 632.758 kb on - strand at 632.771 kb on + strand at 632.771 kb on + strand at 632.771 kb on + strand at 632.839 kb on + strand at 632.928 kb on + strand at 632.928 kb on + strand at 633.035 kb on + strand, within BWI76_RS03085 at 633.035 kb on + strand, within BWI76_RS03085 at 633.281 kb on + strand, within BWI76_RS03085 at 633.286 kb on + strand, within BWI76_RS03085 at 633.289 kb on - strand, within BWI76_RS03085 at 633.832 kb on - strand, within BWI76_RS03085 at 633.899 kb on - strand, within BWI76_RS03085 at 633.982 kb on - strand, within BWI76_RS03085 at 634.063 kb on - strand, within BWI76_RS03085 at 634.108 kb on - strand, within BWI76_RS03085 at 634.214 kb on - strand, within BWI76_RS03085 at 634.301 kb on - strand, within BWI76_RS03085 at 634.422 kb on + strand, within BWI76_RS03085 at 634.430 kb on - strand, within BWI76_RS03085 at 634.430 kb on - strand, within BWI76_RS03085 at 634.562 kb on + strand at 634.573 kb on + strand at 634.979 kb on - strand at 634.997 kb on + strand at 634.997 kb on + strand at 635.118 kb on + strand at 635.226 kb on + strand at 635.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 631,852 + BWI76_RS03080 0.14 -1.0 631,860 - BWI76_RS03080 0.15 -2.6 631,932 + BWI76_RS03080 0.24 +0.1 632,081 - BWI76_RS03080 0.41 -1.5 632,086 - BWI76_RS03080 0.41 -1.3 632,231 - BWI76_RS03080 0.58 -1.9 632,591 - -1.1 632,629 - +1.3 632,758 - -2.0 632,771 + -1.0 632,771 + +0.2 632,771 + -0.6 632,839 + -1.3 632,928 + +0.5 632,928 + -0.3 633,035 + BWI76_RS03085 0.15 +0.0 633,035 + BWI76_RS03085 0.15 -0.3 633,281 + BWI76_RS03085 0.28 -0.2 633,286 + BWI76_RS03085 0.29 +0.5 633,289 - BWI76_RS03085 0.29 -0.2 633,832 - BWI76_RS03085 0.57 -0.2 633,899 - BWI76_RS03085 0.61 -1.1 633,982 - BWI76_RS03085 0.65 -0.3 634,063 - BWI76_RS03085 0.69 -0.1 634,108 - BWI76_RS03085 0.72 -0.7 634,214 - BWI76_RS03085 0.77 -1.4 634,301 - BWI76_RS03085 0.82 +0.1 634,422 + BWI76_RS03085 0.88 -0.6 634,430 - BWI76_RS03085 0.88 -0.2 634,430 - BWI76_RS03085 0.88 +0.1 634,562 + +0.5 634,573 + -0.1 634,979 - -0.4 634,997 + -2.9 634,997 + +0.5 635,118 + +0.8 635,226 + +0.1 635,325 - +0.0
Or see this region's nucleotide sequence