Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02940

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02935 and BWI76_RS02940 are separated by 369 nucleotidesBWI76_RS02940 and BWI76_RS02945 are separated by 260 nucleotidesBWI76_RS02945 and BWI76_RS02950 are separated by 79 nucleotides BWI76_RS02935: BWI76_RS02935 - anaerobic ribonucleoside triphosphate reductase, at 598,863 to 601,001 _RS02935 BWI76_RS02940: BWI76_RS02940 - RpiR family transcriptional regulator, at 601,371 to 602,114 _RS02940 BWI76_RS02945: BWI76_RS02945 - PTS sugar transporter subunit IIB, at 602,375 to 602,683 _RS02945 BWI76_RS02950: BWI76_RS02950 - 6-phospho-beta-glucosidase, at 602,763 to 604,070 _RS02950 Position (kb) 601 602 603Strain fitness (log2 ratio) -1 0 1 2at 600.406 kb on - strand, within BWI76_RS02935at 600.580 kb on + strand, within BWI76_RS02935at 600.620 kb on + strand, within BWI76_RS02935at 600.620 kb on + strand, within BWI76_RS02935at 600.670 kb on + strand, within BWI76_RS02935at 600.678 kb on - strand, within BWI76_RS02935at 600.755 kb on - strand, within BWI76_RS02935at 600.997 kb on + strandat 600.997 kb on - strandat 601.009 kb on + strandat 601.049 kb on - strandat 601.115 kb on + strandat 601.156 kb on - strandat 601.285 kb on - strandat 601.395 kb on - strandat 601.442 kb on - strandat 601.446 kb on - strand, within BWI76_RS02940at 601.535 kb on + strand, within BWI76_RS02940at 601.699 kb on + strand, within BWI76_RS02940at 601.887 kb on - strand, within BWI76_RS02940at 602.079 kb on + strandat 602.344 kb on - strandat 602.382 kb on + strandat 602.390 kb on - strandat 602.575 kb on + strandat 602.669 kb on + strandat 602.731 kb on + strandat 602.811 kb on - strandat 602.811 kb on - strandat 602.827 kb on + strandat 602.827 kb on + strandat 602.835 kb on - strandat 602.927 kb on + strand, within BWI76_RS02950

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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600,406 - BWI76_RS02935 0.72 -1.3
600,580 + BWI76_RS02935 0.80 -0.1
600,620 + BWI76_RS02935 0.82 -0.8
600,620 + BWI76_RS02935 0.82 +0.4
600,670 + BWI76_RS02935 0.84 -0.9
600,678 - BWI76_RS02935 0.85 -0.3
600,755 - BWI76_RS02935 0.88 +2.4
600,997 + +0.9
600,997 - +0.5
601,009 + -0.5
601,049 - +0.3
601,115 + +2.1
601,156 - -1.2
601,285 - -0.3
601,395 - -0.2
601,442 - -1.7
601,446 - BWI76_RS02940 0.10 -0.5
601,535 + BWI76_RS02940 0.22 -1.1
601,699 + BWI76_RS02940 0.44 -0.9
601,887 - BWI76_RS02940 0.69 -0.8
602,079 + +0.3
602,344 - -0.4
602,382 + -0.6
602,390 - +1.7
602,575 + -0.1
602,669 + +0.2
602,731 + +0.1
602,811 - -0.2
602,811 - +0.4
602,827 + +1.1
602,827 + +0.2
602,835 - +0.6
602,927 + BWI76_RS02950 0.13 -0.9

Or see this region's nucleotide sequence