Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02650 and BWI76_RS02655 are separated by 138 nucleotides BWI76_RS02655 and BWI76_RS02660 are separated by 337 nucleotides BWI76_RS02660 and BWI76_RS02665 are separated by 5 nucleotides
BWI76_RS02650: BWI76_RS02650 - MFS transporter, at 540,528 to 541,721
_RS02650
BWI76_RS02655: BWI76_RS02655 - hypothetical protein, at 541,860 to 542,135
_RS02655
BWI76_RS02660: BWI76_RS02660 - 30S ribosomal protein S6, at 542,473 to 542,868
_RS02660
BWI76_RS02665: BWI76_RS02665 - primosomal replication protein N, at 542,874 to 543,188
_RS02665
Position (kb) 541
542
543 Strain fitness (log2 ratio) -1
0
1
2
3 at 540.892 kb on - strand, within BWI76_RS02650 at 540.892 kb on - strand, within BWI76_RS02650 at 541.050 kb on + strand, within BWI76_RS02650 at 541.079 kb on + strand, within BWI76_RS02650 at 541.106 kb on - strand, within BWI76_RS02650 at 541.113 kb on - strand, within BWI76_RS02650 at 541.115 kb on + strand, within BWI76_RS02650 at 541.178 kb on + strand, within BWI76_RS02650 at 541.351 kb on - strand, within BWI76_RS02650 at 541.457 kb on + strand, within BWI76_RS02650 at 541.457 kb on + strand, within BWI76_RS02650 at 541.457 kb on + strand at 541.465 kb on - strand, within BWI76_RS02650 at 541.465 kb on - strand, within BWI76_RS02650 at 541.465 kb on - strand, within BWI76_RS02650 at 541.487 kb on - strand, within BWI76_RS02650 at 541.824 kb on + strand at 541.874 kb on - strand at 541.940 kb on - strand, within BWI76_RS02655 at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.146 kb on + strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.154 kb on - strand at 542.164 kb on - strand at 542.193 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 540,892 - BWI76_RS02650 0.30 -1.2 540,892 - BWI76_RS02650 0.30 -0.7 541,050 + BWI76_RS02650 0.44 +0.5 541,079 + BWI76_RS02650 0.46 -0.1 541,106 - BWI76_RS02650 0.48 -0.9 541,113 - BWI76_RS02650 0.49 +0.4 541,115 + BWI76_RS02650 0.49 -1.7 541,178 + BWI76_RS02650 0.54 -0.0 541,351 - BWI76_RS02650 0.69 -1.1 541,457 + BWI76_RS02650 0.78 -1.5 541,457 + BWI76_RS02650 0.78 -0.6 541,457 + +1.0 541,465 - BWI76_RS02650 0.78 -0.2 541,465 - BWI76_RS02650 0.78 -0.3 541,465 - BWI76_RS02650 0.78 +0.6 541,487 - BWI76_RS02650 0.80 -0.9 541,824 + +1.5 541,874 - +1.0 541,940 - BWI76_RS02655 0.29 -1.2 542,146 + +0.3 542,146 + -0.7 542,146 + +3.6 542,146 + -1.3 542,154 - +0.0 542,154 - -1.1 542,154 - +0.4 542,154 - -0.6 542,164 - -0.4 542,193 + +0.0
Or see this region's nucleotide sequence