Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01830 and BWI76_RS01835 are separated by 27 nucleotides BWI76_RS01835 and BWI76_RS01840 are separated by 55 nucleotides BWI76_RS01840 and BWI76_RS01845 are separated by 98 nucleotides
BWI76_RS01830: BWI76_RS01830 - maltose ABC transporter, substrate-binding component MalE <small>(from data)</small>, at 373,299 to 374,489
_RS01830
BWI76_RS01835: BWI76_RS01835 - chemotaxis protein CheW, at 374,517 to 374,804
_RS01835
BWI76_RS01840: BWI76_RS01840 - maltose ABC transporter, ATPase component (MalK) <small>(from data)</small>, at 374,860 to 375,969
_RS01840
BWI76_RS01845: BWI76_RS01845 - maltoporin, at 376,068 to 377,354
_RS01845
Position (kb) 374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 373.860 kb on + strand, within BWI76_RS01830 at 373.969 kb on - strand, within BWI76_RS01830 at 373.978 kb on + strand, within BWI76_RS01830 at 374.161 kb on + strand, within BWI76_RS01830 at 374.580 kb on + strand, within BWI76_RS01835 at 374.586 kb on + strand, within BWI76_RS01835 at 374.594 kb on - strand, within BWI76_RS01835 at 374.642 kb on + strand, within BWI76_RS01835 at 374.789 kb on + strand at 375.168 kb on - strand, within BWI76_RS01840 at 375.681 kb on + strand, within BWI76_RS01840 at 375.924 kb on + strand at 375.995 kb on + strand at 376.139 kb on + strand at 376.347 kb on - strand, within BWI76_RS01845 at 376.375 kb on + strand, within BWI76_RS01845 at 376.547 kb on - strand, within BWI76_RS01845 at 376.708 kb on + strand, within BWI76_RS01845 at 376.708 kb on + strand, within BWI76_RS01845 at 376.733 kb on - strand, within BWI76_RS01845 at 376.786 kb on + strand, within BWI76_RS01845 at 376.932 kb on + strand, within BWI76_RS01845
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 373,860 + BWI76_RS01830 0.47 +0.5 373,969 - BWI76_RS01830 0.56 +2.1 373,978 + BWI76_RS01830 0.57 -0.6 374,161 + BWI76_RS01830 0.72 -0.6 374,580 + BWI76_RS01835 0.22 -1.8 374,586 + BWI76_RS01835 0.24 -0.3 374,594 - BWI76_RS01835 0.27 -0.4 374,642 + BWI76_RS01835 0.43 -0.2 374,789 + -0.4 375,168 - BWI76_RS01840 0.28 -1.5 375,681 + BWI76_RS01840 0.74 -1.5 375,924 + +0.3 375,995 + -0.3 376,139 + +1.1 376,347 - BWI76_RS01845 0.22 -1.0 376,375 + BWI76_RS01845 0.24 -0.5 376,547 - BWI76_RS01845 0.37 +0.4 376,708 + BWI76_RS01845 0.50 +0.0 376,708 + BWI76_RS01845 0.50 -1.5 376,733 - BWI76_RS01845 0.52 -0.5 376,786 + BWI76_RS01845 0.56 +0.4 376,932 + BWI76_RS01845 0.67 -0.1
Or see this region's nucleotide sequence