Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00515

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00510 and BWI76_RS00515 overlap by 4 nucleotidesBWI76_RS00515 and BWI76_RS00520 are separated by 175 nucleotides BWI76_RS00510: BWI76_RS00510 - glucuronyl hydrolase, at 103,932 to 105,110 _RS00510 BWI76_RS00515: BWI76_RS00515 - PTS fructose transporter subunit IIA, at 105,107 to 105,589 _RS00515 BWI76_RS00520: BWI76_RS00520 - transcription regulator of PTS system, at 105,765 to 108,368 _RS00520 Position (kb) 105 106Strain fitness (log2 ratio) -1 0 1 2 3 4at 104.111 kb on + strand, within BWI76_RS00510at 104.119 kb on - strand, within BWI76_RS00510at 104.119 kb on - strand, within BWI76_RS00510at 104.119 kb on - strand, within BWI76_RS00510at 104.223 kb on - strand, within BWI76_RS00510at 104.265 kb on + strand, within BWI76_RS00510at 104.341 kb on + strand, within BWI76_RS00510at 104.347 kb on - strand, within BWI76_RS00510at 104.349 kb on - strand, within BWI76_RS00510at 104.349 kb on - strand, within BWI76_RS00510at 104.460 kb on - strand, within BWI76_RS00510at 104.654 kb on - strand, within BWI76_RS00510at 104.727 kb on - strand, within BWI76_RS00510at 104.765 kb on - strand, within BWI76_RS00510at 104.772 kb on - strand, within BWI76_RS00510at 104.796 kb on - strand, within BWI76_RS00510at 104.829 kb on + strandat 105.106 kb on + strandat 105.113 kb on - strandat 105.124 kb on - strandat 105.161 kb on - strand, within BWI76_RS00515at 105.201 kb on + strand, within BWI76_RS00515at 105.312 kb on + strand, within BWI76_RS00515at 105.444 kb on - strand, within BWI76_RS00515at 105.457 kb on - strand, within BWI76_RS00515at 105.512 kb on - strand, within BWI76_RS00515at 105.526 kb on + strand, within BWI76_RS00515at 105.614 kb on - strandat 105.726 kb on - strandat 105.734 kb on - strandat 105.762 kb on + strandat 105.762 kb on + strandat 105.762 kb on + strandat 105.763 kb on + strandat 105.770 kb on - strandat 105.770 kb on - strandat 105.771 kb on - strandat 105.771 kb on - strandat 105.784 kb on - strandat 105.855 kb on + strandat 105.940 kb on - strandat 106.051 kb on + strand, within BWI76_RS00520at 106.122 kb on - strand, within BWI76_RS00520at 106.149 kb on - strand, within BWI76_RS00520at 106.223 kb on + strand, within BWI76_RS00520at 106.223 kb on + strand, within BWI76_RS00520at 106.228 kb on + strand, within BWI76_RS00520at 106.231 kb on - strand, within BWI76_RS00520at 106.231 kb on - strand, within BWI76_RS00520at 106.231 kb on - strand, within BWI76_RS00520at 106.236 kb on - strand, within BWI76_RS00520at 106.241 kb on + strand, within BWI76_RS00520at 106.249 kb on - strand, within BWI76_RS00520at 106.288 kb on - strand, within BWI76_RS00520at 106.290 kb on + strand, within BWI76_RS00520at 106.298 kb on - strand, within BWI76_RS00520at 106.300 kb on + strand, within BWI76_RS00520at 106.332 kb on + strand, within BWI76_RS00520at 106.332 kb on + strand, within BWI76_RS00520at 106.481 kb on + strand, within BWI76_RS00520at 106.492 kb on + strand, within BWI76_RS00520at 106.500 kb on - strand, within BWI76_RS00520at 106.527 kb on - strand, within BWI76_RS00520at 106.551 kb on + strand, within BWI76_RS00520at 106.572 kb on - strand, within BWI76_RS00520

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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104,111 + BWI76_RS00510 0.15 +0.1
104,119 - BWI76_RS00510 0.16 +0.1
104,119 - BWI76_RS00510 0.16 -0.7
104,119 - BWI76_RS00510 0.16 +1.1
104,223 - BWI76_RS00510 0.25 -0.2
104,265 + BWI76_RS00510 0.28 -0.5
104,341 + BWI76_RS00510 0.35 +1.1
104,347 - BWI76_RS00510 0.35 -0.2
104,349 - BWI76_RS00510 0.35 -1.0
104,349 - BWI76_RS00510 0.35 +1.7
104,460 - BWI76_RS00510 0.45 -0.3
104,654 - BWI76_RS00510 0.61 -0.1
104,727 - BWI76_RS00510 0.67 -0.0
104,765 - BWI76_RS00510 0.71 +1.0
104,772 - BWI76_RS00510 0.71 -0.6
104,796 - BWI76_RS00510 0.73 +1.1
104,829 + +1.7
105,106 + +0.8
105,113 - -1.2
105,124 - +0.2
105,161 - BWI76_RS00515 0.11 -0.3
105,201 + BWI76_RS00515 0.19 +0.8
105,312 + BWI76_RS00515 0.42 -0.1
105,444 - BWI76_RS00515 0.70 +4.4
105,457 - BWI76_RS00515 0.72 +0.5
105,512 - BWI76_RS00515 0.84 +0.1
105,526 + BWI76_RS00515 0.87 +0.1
105,614 - -0.4
105,726 - +0.7
105,734 - -0.0
105,762 + +1.0
105,762 + +0.2
105,762 + -1.0
105,763 + +4.5
105,770 - -0.8
105,770 - -0.0
105,771 - -0.2
105,771 - +0.4
105,784 - -0.7
105,855 + +0.8
105,940 - -1.0
106,051 + BWI76_RS00520 0.11 -0.0
106,122 - BWI76_RS00520 0.14 +0.8
106,149 - BWI76_RS00520 0.15 +0.2
106,223 + BWI76_RS00520 0.18 +1.3
106,223 + BWI76_RS00520 0.18 -0.2
106,228 + BWI76_RS00520 0.18 +1.1
106,231 - BWI76_RS00520 0.18 -0.7
106,231 - BWI76_RS00520 0.18 +0.7
106,231 - BWI76_RS00520 0.18 -0.3
106,236 - BWI76_RS00520 0.18 +0.2
106,241 + BWI76_RS00520 0.18 -0.9
106,249 - BWI76_RS00520 0.19 -0.3
106,288 - BWI76_RS00520 0.20 -0.2
106,290 + BWI76_RS00520 0.20 +2.7
106,298 - BWI76_RS00520 0.20 -1.2
106,300 + BWI76_RS00520 0.21 +0.2
106,332 + BWI76_RS00520 0.22 +0.8
106,332 + BWI76_RS00520 0.22 -1.3
106,481 + BWI76_RS00520 0.27 +0.5
106,492 + BWI76_RS00520 0.28 -0.2
106,500 - BWI76_RS00520 0.28 +0.6
106,527 - BWI76_RS00520 0.29 +0.8
106,551 + BWI76_RS00520 0.30 +2.7
106,572 - BWI76_RS00520 0.31 +0.0

Or see this region's nucleotide sequence