Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23930

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23925 and BWI76_RS23930 are separated by 169 nucleotidesBWI76_RS23930 and BWI76_RS23935 are separated by 198 nucleotides BWI76_RS23925: BWI76_RS23925 - ribose-5-phosphate isomerase, at 4,993,026 to 4,993,685 _RS23925 BWI76_RS23930: BWI76_RS23930 - transcriptional regulator ArgP, at 4,993,855 to 4,994,748 _RS23930 BWI76_RS23935: BWI76_RS23935 - methylmalonyl-CoA mutase, at 4,994,947 to 4,997,091 _RS23935 Position (kb) 4993 4994 4995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4993.048 kb on + strandat 4993.057 kb on + strandat 4993.407 kb on + strand, within BWI76_RS23925at 4993.628 kb on + strandat 4993.845 kb on + strandat 4993.877 kb on - strandat 4993.885 kb on - strandat 4993.904 kb on + strandat 4994.015 kb on + strand, within BWI76_RS23930at 4994.269 kb on + strand, within BWI76_RS23930at 4994.288 kb on + strand, within BWI76_RS23930at 4994.357 kb on + strand, within BWI76_RS23930at 4994.402 kb on + strand, within BWI76_RS23930at 4994.750 kb on - strandat 4995.167 kb on - strand, within BWI76_RS23935at 4995.167 kb on - strand, within BWI76_RS23935at 4995.167 kb on - strand, within BWI76_RS23935at 4995.167 kb on - strand, within BWI76_RS23935at 4995.212 kb on - strand, within BWI76_RS23935at 4995.259 kb on + strand, within BWI76_RS23935at 4995.419 kb on + strand, within BWI76_RS23935at 4995.476 kb on + strand, within BWI76_RS23935at 4995.525 kb on + strand, within BWI76_RS23935at 4995.631 kb on - strand, within BWI76_RS23935at 4995.668 kb on - strand, within BWI76_RS23935

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,993,048 + -0.1
4,993,057 + +0.1
4,993,407 + BWI76_RS23925 0.58 +0.9
4,993,628 + +2.2
4,993,845 + +0.8
4,993,877 - +0.8
4,993,885 - +0.4
4,993,904 + -0.7
4,994,015 + BWI76_RS23930 0.18 +2.7
4,994,269 + BWI76_RS23930 0.46 -0.1
4,994,288 + BWI76_RS23930 0.48 +0.7
4,994,357 + BWI76_RS23930 0.56 -0.5
4,994,402 + BWI76_RS23930 0.61 +1.5
4,994,750 - -1.6
4,995,167 - BWI76_RS23935 0.10 +0.4
4,995,167 - BWI76_RS23935 0.10 +0.3
4,995,167 - BWI76_RS23935 0.10 -1.0
4,995,167 - BWI76_RS23935 0.10 -2.9
4,995,212 - BWI76_RS23935 0.12 -0.4
4,995,259 + BWI76_RS23935 0.15 +1.4
4,995,419 + BWI76_RS23935 0.22 +1.1
4,995,476 + BWI76_RS23935 0.25 -0.6
4,995,525 + BWI76_RS23935 0.27 +0.9
4,995,631 - BWI76_RS23935 0.32 +0.1
4,995,668 - BWI76_RS23935 0.34 +0.4

Or see this region's nucleotide sequence