Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22265

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22260 and BWI76_RS22265 overlap by 4 nucleotidesBWI76_RS22265 and BWI76_RS22270 are separated by 254 nucleotides BWI76_RS22260: BWI76_RS22260 - anaerobic nitric oxide reductase flavorubredoxin, at 4,638,822 to 4,640,267 _RS22260 BWI76_RS22265: BWI76_RS22265 - NADH:flavorubredoxin oxidoreductase, at 4,640,264 to 4,641,397 _RS22265 BWI76_RS22270: BWI76_RS22270 - nickel transporter, at 4,641,652 to 4,642,665 _RS22270 Position (kb) 4640 4641 4642Strain fitness (log2 ratio) -1 0 1 2at 4639.302 kb on + strand, within BWI76_RS22260at 4639.339 kb on - strand, within BWI76_RS22260at 4639.339 kb on - strand, within BWI76_RS22260at 4639.405 kb on - strand, within BWI76_RS22260at 4639.667 kb on - strand, within BWI76_RS22260at 4639.897 kb on - strand, within BWI76_RS22260at 4639.955 kb on + strand, within BWI76_RS22260at 4640.399 kb on - strand, within BWI76_RS22265at 4640.663 kb on + strand, within BWI76_RS22265at 4640.894 kb on - strand, within BWI76_RS22265at 4641.366 kb on + strandat 4641.391 kb on - strandat 4641.528 kb on - strandat 4641.651 kb on - strandat 4641.721 kb on - strandat 4641.776 kb on - strand, within BWI76_RS22270at 4641.839 kb on + strand, within BWI76_RS22270at 4641.847 kb on - strand, within BWI76_RS22270at 4641.893 kb on + strand, within BWI76_RS22270at 4641.930 kb on - strand, within BWI76_RS22270at 4642.218 kb on + strand, within BWI76_RS22270at 4642.226 kb on - strand, within BWI76_RS22270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
4,639,302 + BWI76_RS22260 0.33 +1.9
4,639,339 - BWI76_RS22260 0.36 -0.2
4,639,339 - BWI76_RS22260 0.36 -0.8
4,639,405 - BWI76_RS22260 0.40 +0.2
4,639,667 - BWI76_RS22260 0.58 +1.0
4,639,897 - BWI76_RS22260 0.74 +0.1
4,639,955 + BWI76_RS22260 0.78 -0.0
4,640,399 - BWI76_RS22265 0.12 -0.7
4,640,663 + BWI76_RS22265 0.35 -1.1
4,640,894 - BWI76_RS22265 0.56 -1.0
4,641,366 + -1.2
4,641,391 - -0.1
4,641,528 - -0.7
4,641,651 - +0.1
4,641,721 - +0.0
4,641,776 - BWI76_RS22270 0.12 +0.6
4,641,839 + BWI76_RS22270 0.18 +0.3
4,641,847 - BWI76_RS22270 0.19 -0.3
4,641,893 + BWI76_RS22270 0.24 +0.3
4,641,930 - BWI76_RS22270 0.27 +0.1
4,642,218 + BWI76_RS22270 0.56 +0.3
4,642,226 - BWI76_RS22270 0.57 +0.2

Or see this region's nucleotide sequence