Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07860

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS07855 and BWI76_RS07860 are separated by 2 nucleotidesBWI76_RS07860 and BWI76_RS07865 are separated by 504 nucleotides BWI76_RS07855: BWI76_RS07855 - PucR family transcriptional regulator, at 1,666,385 to 1,667,620 _RS07855 BWI76_RS07860: BWI76_RS07860 - cytosine permease, at 1,667,623 to 1,668,885 _RS07860 BWI76_RS07865: BWI76_RS07865 - methylthioribulose 1-phosphate dehydratase, at 1,669,390 to 1,670,001 _RS07865 Position (kb) 1667 1668 1669Strain fitness (log2 ratio) -1 0 1at 1666.669 kb on + strandat 1667.291 kb on - strand, within BWI76_RS07855at 1667.622 kb on - strandat 1667.700 kb on + strandat 1667.700 kb on + strandat 1667.700 kb on + strandat 1667.887 kb on - strand, within BWI76_RS07860at 1668.228 kb on + strand, within BWI76_RS07860at 1668.508 kb on - strandat 1668.903 kb on - strandat 1668.931 kb on + strandat 1668.962 kb on + strandat 1668.984 kb on - strandat 1669.233 kb on - strandat 1669.326 kb on + strandat 1669.484 kb on + strand, within BWI76_RS07865at 1669.568 kb on - strand, within BWI76_RS07865at 1669.731 kb on + strand, within BWI76_RS07865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
1,666,669 + +0.2
1,667,291 - BWI76_RS07855 0.73 -0.2
1,667,622 - +0.4
1,667,700 + -0.7
1,667,700 + -0.3
1,667,700 + +0.3
1,667,887 - BWI76_RS07860 0.21 -1.0
1,668,228 + BWI76_RS07860 0.48 -1.1
1,668,508 - +0.9
1,668,903 - +0.6
1,668,931 + -0.1
1,668,962 + -0.0
1,668,984 - +0.2
1,669,233 - -0.3
1,669,326 + +0.9
1,669,484 + BWI76_RS07865 0.15 +0.2
1,669,568 - BWI76_RS07865 0.29 -1.1
1,669,731 + BWI76_RS07865 0.56 +0.5

Or see this region's nucleotide sequence