Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05505 and BWI76_RS05510 are separated by 6 nucleotides BWI76_RS05510 and BWI76_RS05515 are separated by 11 nucleotides BWI76_RS05515 and BWI76_RS05520 are separated by 2 nucleotides BWI76_RS05520 and BWI76_RS05525 are separated by 32 nucleotides
BWI76_RS05505: BWI76_RS05505 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 1,155,199 to 1,155,837
_RS05505
BWI76_RS05510: BWI76_RS05510 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 1,155,844 to 1,156,440
_RS05510
BWI76_RS05515: BWI76_RS05515 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 1,156,452 to 1,157,675
_RS05515
BWI76_RS05520: BWI76_RS05520 - hypothetical protein, at 1,157,678 to 1,157,893
_RS05520
BWI76_RS05525: BWI76_RS05525 - glycerophosphodiester phosphodiesterase, at 1,157,926 to 1,158,783
_RS05525
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-1
0
1
2 at 1155.862 kb on - strand at 1156.033 kb on - strand, within BWI76_RS05510 at 1156.158 kb on + strand, within BWI76_RS05510 at 1156.158 kb on + strand, within BWI76_RS05510 at 1156.166 kb on - strand, within BWI76_RS05510 at 1156.375 kb on - strand, within BWI76_RS05510 at 1156.375 kb on - strand, within BWI76_RS05510 at 1156.511 kb on + strand at 1156.733 kb on + strand, within BWI76_RS05515 at 1156.858 kb on - strand, within BWI76_RS05515 at 1157.126 kb on - strand, within BWI76_RS05515 at 1157.340 kb on + strand, within BWI76_RS05515 at 1157.773 kb on - strand, within BWI76_RS05520 at 1157.809 kb on + strand, within BWI76_RS05520 at 1157.820 kb on + strand, within BWI76_RS05520 at 1157.820 kb on + strand, within BWI76_RS05520 at 1157.828 kb on - strand, within BWI76_RS05520 at 1158.058 kb on + strand, within BWI76_RS05525 at 1158.058 kb on + strand, within BWI76_RS05525 at 1158.329 kb on - strand, within BWI76_RS05525 at 1158.330 kb on - strand, within BWI76_RS05525 at 1158.542 kb on - strand, within BWI76_RS05525
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,155,862 - +0.3 1,156,033 - BWI76_RS05510 0.32 -0.4 1,156,158 + BWI76_RS05510 0.53 -0.1 1,156,158 + BWI76_RS05510 0.53 -1.0 1,156,166 - BWI76_RS05510 0.54 -0.1 1,156,375 - BWI76_RS05510 0.89 +0.6 1,156,375 - BWI76_RS05510 0.89 -0.0 1,156,511 + -0.4 1,156,733 + BWI76_RS05515 0.23 -0.9 1,156,858 - BWI76_RS05515 0.33 -1.2 1,157,126 - BWI76_RS05515 0.55 -1.2 1,157,340 + BWI76_RS05515 0.73 -1.1 1,157,773 - BWI76_RS05520 0.44 -0.8 1,157,809 + BWI76_RS05520 0.61 -0.4 1,157,820 + BWI76_RS05520 0.66 +1.8 1,157,820 + BWI76_RS05520 0.66 -0.3 1,157,828 - BWI76_RS05520 0.69 +0.2 1,158,058 + BWI76_RS05525 0.15 -0.6 1,158,058 + BWI76_RS05525 0.15 -1.1 1,158,329 - BWI76_RS05525 0.47 -1.4 1,158,330 - BWI76_RS05525 0.47 -0.7 1,158,542 - BWI76_RS05525 0.72 -0.8
Or see this region's nucleotide sequence