Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03610 and BWI76_RS03615 overlap by 4 nucleotides BWI76_RS03615 and BWI76_RS03620 are separated by 17 nucleotides BWI76_RS03620 and BWI76_RS03625 are separated by 147 nucleotides
BWI76_RS03610: BWI76_RS03610 - hypothetical protein, at 747,244 to 747,762
_RS03610
BWI76_RS03615: BWI76_RS03615 - putative transcriptional regulatory protein, at 747,759 to 748,559
_RS03615
BWI76_RS03620: BWI76_RS03620 - TetR family transcriptional regulator, at 748,577 to 749,161
_RS03620
BWI76_RS03625: BWI76_RS03625 - NAD(P)H quinone oxidoreductase, at 749,309 to 750,091
_RS03625
Position (kb) 748
749
750 Strain fitness (log2 ratio) -2
-1
0
1
2 at 747.652 kb on + strand, within BWI76_RS03610 at 747.722 kb on + strand at 747.809 kb on + strand at 747.856 kb on - strand, within BWI76_RS03615 at 748.031 kb on + strand, within BWI76_RS03615 at 748.040 kb on + strand, within BWI76_RS03615 at 748.255 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.265 kb on + strand, within BWI76_RS03615 at 748.369 kb on + strand, within BWI76_RS03615 at 748.574 kb on + strand at 748.728 kb on + strand, within BWI76_RS03620 at 748.814 kb on - strand, within BWI76_RS03620 at 748.823 kb on + strand, within BWI76_RS03620 at 748.823 kb on + strand, within BWI76_RS03620 at 748.859 kb on + strand, within BWI76_RS03620 at 748.867 kb on - strand, within BWI76_RS03620 at 749.145 kb on - strand at 749.219 kb on - strand at 749.320 kb on - strand at 749.376 kb on - strand at 749.381 kb on + strand at 749.483 kb on - strand, within BWI76_RS03625 at 749.530 kb on + strand, within BWI76_RS03625 at 749.538 kb on - strand, within BWI76_RS03625 at 749.568 kb on + strand, within BWI76_RS03625 at 749.610 kb on + strand at 749.739 kb on + strand, within BWI76_RS03625 at 749.739 kb on + strand, within BWI76_RS03625 at 749.754 kb on + strand, within BWI76_RS03625 at 749.757 kb on - strand, within BWI76_RS03625 at 749.970 kb on + strand, within BWI76_RS03625 at 749.978 kb on - strand, within BWI76_RS03625 at 749.984 kb on + strand, within BWI76_RS03625 at 750.123 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 747,652 + BWI76_RS03610 0.79 -0.1 747,722 + -0.8 747,809 + +0.5 747,856 - BWI76_RS03615 0.12 -0.0 748,031 + BWI76_RS03615 0.34 +0.4 748,040 + BWI76_RS03615 0.35 -0.9 748,255 + BWI76_RS03615 0.62 +0.5 748,265 + BWI76_RS03615 0.63 +0.0 748,265 + BWI76_RS03615 0.63 +0.4 748,265 + BWI76_RS03615 0.63 -0.4 748,369 + BWI76_RS03615 0.76 -1.2 748,574 + -0.1 748,728 + BWI76_RS03620 0.26 -1.5 748,814 - BWI76_RS03620 0.41 -1.0 748,823 + BWI76_RS03620 0.42 -2.0 748,823 + BWI76_RS03620 0.42 -0.1 748,859 + BWI76_RS03620 0.48 +0.0 748,867 - BWI76_RS03620 0.50 -1.1 749,145 - +0.9 749,219 - +0.5 749,320 - +0.6 749,376 - +0.9 749,381 + +1.5 749,483 - BWI76_RS03625 0.22 +0.5 749,530 + BWI76_RS03625 0.28 -0.3 749,538 - BWI76_RS03625 0.29 -0.2 749,568 + BWI76_RS03625 0.33 -0.2 749,610 + +2.5 749,739 + BWI76_RS03625 0.55 -0.6 749,739 + BWI76_RS03625 0.55 +0.5 749,754 + BWI76_RS03625 0.57 -0.5 749,757 - BWI76_RS03625 0.57 -0.0 749,970 + BWI76_RS03625 0.84 +0.2 749,978 - BWI76_RS03625 0.85 -0.7 749,984 + BWI76_RS03625 0.86 -1.1 750,123 + +0.0
Or see this region's nucleotide sequence