Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24665 and BWI76_RS24670 are separated by 37 nucleotides BWI76_RS24670 and BWI76_RS24675 are separated by 219 nucleotides
BWI76_RS24665: BWI76_RS24665 - LsrR family transcriptional regulator, at 5,140,733 to 5,141,704
_RS24665
BWI76_RS24670: BWI76_RS24670 - autoinducer-2 kinase, at 5,141,742 to 5,143,334
_RS24670
BWI76_RS24675: BWI76_RS24675 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 5,143,554 to 5,145,575
_RS24675
Position (kb)
5141
5142
5143
5144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5140.846 kb on + strand, within BWI76_RS24665 at 5140.846 kb on - strand, within BWI76_RS24665 at 5141.088 kb on + strand, within BWI76_RS24665 at 5141.126 kb on + strand, within BWI76_RS24665 at 5141.143 kb on + strand, within BWI76_RS24665 at 5141.438 kb on + strand, within BWI76_RS24665 at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.948 kb on - strand, within BWI76_RS24670 at 5142.253 kb on - strand, within BWI76_RS24670 at 5142.313 kb on - strand, within BWI76_RS24670 at 5142.335 kb on + strand, within BWI76_RS24670 at 5142.541 kb on + strand, within BWI76_RS24670 at 5142.859 kb on - strand, within BWI76_RS24670 at 5142.885 kb on + strand, within BWI76_RS24670 at 5143.057 kb on + strand, within BWI76_RS24670 at 5143.121 kb on + strand, within BWI76_RS24670 at 5143.329 kb on + strand at 5143.329 kb on + strand at 5143.337 kb on - strand at 5143.337 kb on - strand at 5143.337 kb on - strand at 5143.337 kb on - strand at 5143.776 kb on + strand, within BWI76_RS24675 at 5143.784 kb on - strand, within BWI76_RS24675 at 5143.786 kb on - strand, within BWI76_RS24675 at 5143.836 kb on - strand, within BWI76_RS24675 at 5144.150 kb on + strand, within BWI76_RS24675 at 5144.158 kb on - strand, within BWI76_RS24675
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,140,846 + BWI76_RS24665 0.12 -0.3 5,140,846 - BWI76_RS24665 0.12 +0.5 5,141,088 + BWI76_RS24665 0.37 +0.1 5,141,126 + BWI76_RS24665 0.40 +0.1 5,141,143 + BWI76_RS24665 0.42 -1.8 5,141,438 + BWI76_RS24665 0.73 +0.5 5,141,707 + +1.5 5,141,707 + +0.0 5,141,707 + +0.6 5,141,948 - BWI76_RS24670 0.13 +0.2 5,142,253 - BWI76_RS24670 0.32 -0.9 5,142,313 - BWI76_RS24670 0.36 +0.6 5,142,335 + BWI76_RS24670 0.37 -1.5 5,142,541 + BWI76_RS24670 0.50 +3.3 5,142,859 - BWI76_RS24670 0.70 +2.6 5,142,885 + BWI76_RS24670 0.72 -0.5 5,143,057 + BWI76_RS24670 0.83 +3.2 5,143,121 + BWI76_RS24670 0.87 -0.4 5,143,329 + +0.1 5,143,329 + -0.5 5,143,337 - -2.7 5,143,337 - -2.2 5,143,337 - -1.3 5,143,337 - +0.2 5,143,776 + BWI76_RS24675 0.11 -1.1 5,143,784 - BWI76_RS24675 0.11 +0.3 5,143,786 - BWI76_RS24675 0.11 -0.5 5,143,836 - BWI76_RS24675 0.14 -0.3 5,144,150 + BWI76_RS24675 0.29 -0.6 5,144,158 - BWI76_RS24675 0.30 -0.5
Or see this region's nucleotide sequence