Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09880

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09875 and BWI76_RS09880 are separated by 591 nucleotidesBWI76_RS09880 and BWI76_RS09885 are separated by 308 nucleotides BWI76_RS09875: BWI76_RS09875 - phosphoporin PhoE, at 2,074,194 to 2,075,273 _RS09875 BWI76_RS09880: BWI76_RS09880 - asparagine--tRNA ligase, at 2,075,865 to 2,077,265 _RS09880 BWI76_RS09885: BWI76_RS09885 - nicotinate phosphoribosyltransferase, at 2,077,574 to 2,078,776 _RS09885 Position (kb) 2075 2076 2077 2078Strain fitness (log2 ratio) -2 -1 0 1at 2074.865 kb on - strand, within BWI76_RS09875at 2075.040 kb on - strand, within BWI76_RS09875at 2075.401 kb on + strandat 2075.409 kb on - strandat 2075.751 kb on + strandat 2077.468 kb on - strandat 2077.506 kb on - strandat 2077.608 kb on + strandat 2077.609 kb on - strandat 2077.616 kb on - strandat 2077.633 kb on - strandat 2077.664 kb on + strandat 2077.664 kb on + strandat 2077.683 kb on + strandat 2077.697 kb on - strand, within BWI76_RS09885at 2077.748 kb on + strand, within BWI76_RS09885at 2077.756 kb on - strand, within BWI76_RS09885at 2077.757 kb on - strand, within BWI76_RS09885at 2077.890 kb on + strand, within BWI76_RS09885at 2078.016 kb on + strand, within BWI76_RS09885at 2078.147 kb on - strand, within BWI76_RS09885at 2078.212 kb on - strand, within BWI76_RS09885at 2078.229 kb on - strand, within BWI76_RS09885

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,074,865 - BWI76_RS09875 0.62 -1.5
2,075,040 - BWI76_RS09875 0.78 -0.3
2,075,401 + -0.7
2,075,409 - +0.2
2,075,751 + +0.8
2,077,468 - -2.6
2,077,506 - -0.3
2,077,608 + -0.9
2,077,609 - +0.4
2,077,616 - +0.2
2,077,633 - +0.2
2,077,664 + +1.5
2,077,664 + +0.1
2,077,683 + +0.6
2,077,697 - BWI76_RS09885 0.10 -0.3
2,077,748 + BWI76_RS09885 0.14 -0.4
2,077,756 - BWI76_RS09885 0.15 -0.3
2,077,757 - BWI76_RS09885 0.15 +0.2
2,077,890 + BWI76_RS09885 0.26 +0.1
2,078,016 + BWI76_RS09885 0.37 -1.7
2,078,147 - BWI76_RS09885 0.48 -0.4
2,078,212 - BWI76_RS09885 0.53 -0.4
2,078,229 - BWI76_RS09885 0.54 -0.7

Or see this region's nucleotide sequence