Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04035 and BWI76_RS04040 are separated by 13 nucleotides BWI76_RS04040 and BWI76_RS04045 are separated by 341 nucleotides BWI76_RS04045 and BWI76_RS04050 are separated by 47 nucleotides BWI76_RS04050 and BWI76_RS04055 are separated by 108 nucleotides
BWI76_RS04035: BWI76_RS04035 - LuxR family transcriptional regulator, at 834,420 to 835,100
_RS04035
BWI76_RS04040: BWI76_RS04040 - cys-tRNA(pro)/cys-tRNA(cys) deacylase, at 835,114 to 835,572
_RS04040
BWI76_RS04045: BWI76_RS04045 - PTS system lactose/cellobiose-specific transporter subunit IIC, at 835,914 to 837,257
_RS04045
BWI76_RS04050: BWI76_RS04050 - hydroxamate siderophore iron reductase FhuF, at 837,305 to 838,093
_RS04050
BWI76_RS04055: BWI76_RS04055 - GGDEF domain-containing protein, at 838,202 to 839,248
_RS04055
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 834.916 kb on - strand, within BWI76_RS04035 at 834.920 kb on + strand, within BWI76_RS04035 at 834.980 kb on + strand, within BWI76_RS04035 at 834.980 kb on + strand, within BWI76_RS04035 at 834.988 kb on - strand, within BWI76_RS04035 at 834.988 kb on - strand, within BWI76_RS04035 at 834.995 kb on - strand, within BWI76_RS04035 at 834.995 kb on - strand, within BWI76_RS04035 at 834.997 kb on + strand, within BWI76_RS04035 at 834.997 kb on + strand, within BWI76_RS04035 at 834.997 kb on + strand at 835.004 kb on + strand, within BWI76_RS04035 at 835.004 kb on + strand, within BWI76_RS04035 at 835.005 kb on - strand, within BWI76_RS04035 at 835.005 kb on - strand, within BWI76_RS04035 at 835.005 kb on - strand, within BWI76_RS04035 at 835.009 kb on + strand, within BWI76_RS04035 at 835.009 kb on + strand, within BWI76_RS04035 at 835.014 kb on + strand, within BWI76_RS04035 at 835.014 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.020 kb on + strand, within BWI76_RS04035 at 835.028 kb on - strand, within BWI76_RS04035 at 835.028 kb on - strand, within BWI76_RS04035 at 835.028 kb on - strand, within BWI76_RS04035 at 835.028 kb on - strand, within BWI76_RS04035 at 835.028 kb on - strand, within BWI76_RS04035 at 835.028 kb on - strand, within BWI76_RS04035 at 835.028 kb on - strand, within BWI76_RS04035 at 835.063 kb on + strand at 835.070 kb on - strand at 835.072 kb on + strand at 835.078 kb on + strand at 835.080 kb on + strand at 835.080 kb on + strand at 835.080 kb on + strand at 835.087 kb on + strand at 835.087 kb on + strand at 835.087 kb on + strand at 835.088 kb on - strand at 835.090 kb on + strand at 835.095 kb on + strand at 835.095 kb on - strand at 835.095 kb on - strand at 835.095 kb on - strand at 835.098 kb on - strand at 835.100 kb on + strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.100 kb on - strand at 835.101 kb on + strand at 835.103 kb on + strand at 835.129 kb on + strand at 835.133 kb on - strand at 835.139 kb on + strand at 835.142 kb on + strand at 835.150 kb on - strand at 835.166 kb on + strand, within BWI76_RS04040 at 835.174 kb on - strand, within BWI76_RS04040 at 835.174 kb on - strand, within BWI76_RS04040 at 835.207 kb on - strand, within BWI76_RS04040 at 835.207 kb on - strand, within BWI76_RS04040 at 835.212 kb on + strand, within BWI76_RS04040 at 835.219 kb on - strand, within BWI76_RS04040 at 835.220 kb on - strand, within BWI76_RS04040 at 835.224 kb on + strand, within BWI76_RS04040 at 835.232 kb on - strand, within BWI76_RS04040 at 835.246 kb on - strand, within BWI76_RS04040 at 835.274 kb on - strand, within BWI76_RS04040 at 835.282 kb on - strand, within BWI76_RS04040 at 835.286 kb on + strand, within BWI76_RS04040 at 835.453 kb on + strand, within BWI76_RS04040 at 835.482 kb on + strand, within BWI76_RS04040 at 835.482 kb on + strand, within BWI76_RS04040 at 835.490 kb on - strand, within BWI76_RS04040 at 835.493 kb on + strand, within BWI76_RS04040 at 835.493 kb on + strand, within BWI76_RS04040 at 835.493 kb on + strand, within BWI76_RS04040 at 835.501 kb on - strand, within BWI76_RS04040 at 835.506 kb on - strand, within BWI76_RS04040 at 835.529 kb on + strand at 835.569 kb on - strand at 835.569 kb on - strand at 835.584 kb on + strand at 835.592 kb on - strand at 835.784 kb on + strand at 835.897 kb on - strand at 835.897 kb on - strand at 835.899 kb on + strand at 835.907 kb on - strand at 835.996 kb on - strand at 836.154 kb on - strand, within BWI76_RS04045 at 836.348 kb on - strand, within BWI76_RS04045 at 836.524 kb on + strand, within BWI76_RS04045 at 836.531 kb on - strand, within BWI76_RS04045 at 836.660 kb on - strand, within BWI76_RS04045 at 836.675 kb on - strand, within BWI76_RS04045 at 836.842 kb on + strand, within BWI76_RS04045 at 837.008 kb on + strand, within BWI76_RS04045 at 837.011 kb on - strand, within BWI76_RS04045 at 837.016 kb on - strand, within BWI76_RS04045 at 837.078 kb on - strand, within BWI76_RS04045 at 837.143 kb on - strand at 837.337 kb on - strand at 837.366 kb on - strand at 837.434 kb on - strand, within BWI76_RS04050 at 837.572 kb on + strand, within BWI76_RS04050 at 837.777 kb on - strand at 837.839 kb on + strand, within BWI76_RS04050 at 837.906 kb on + strand, within BWI76_RS04050 at 837.946 kb on - strand, within BWI76_RS04050 at 837.956 kb on - strand, within BWI76_RS04050 at 837.970 kb on - strand, within BWI76_RS04050 at 838.030 kb on + strand at 838.032 kb on + strand at 838.032 kb on + strand at 838.032 kb on + strand at 838.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 834,916 - BWI76_RS04035 0.73 -0.2 834,920 + BWI76_RS04035 0.73 -0.5 834,980 + BWI76_RS04035 0.82 -0.1 834,980 + BWI76_RS04035 0.82 -0.2 834,988 - BWI76_RS04035 0.83 +0.7 834,988 - BWI76_RS04035 0.83 -1.7 834,995 - BWI76_RS04035 0.84 -0.7 834,995 - BWI76_RS04035 0.84 -2.3 834,997 + BWI76_RS04035 0.85 -0.3 834,997 + BWI76_RS04035 0.85 +1.5 834,997 + +0.1 835,004 + BWI76_RS04035 0.86 +0.4 835,004 + BWI76_RS04035 0.86 -0.6 835,005 - BWI76_RS04035 0.86 -0.3 835,005 - BWI76_RS04035 0.86 -0.1 835,005 - BWI76_RS04035 0.86 -1.3 835,009 + BWI76_RS04035 0.86 +1.5 835,009 + BWI76_RS04035 0.86 -0.7 835,014 + BWI76_RS04035 0.87 -0.1 835,014 + BWI76_RS04035 0.87 -0.9 835,020 + BWI76_RS04035 0.88 +1.7 835,020 + BWI76_RS04035 0.88 +0.3 835,020 + BWI76_RS04035 0.88 +0.6 835,020 + BWI76_RS04035 0.88 +1.6 835,020 + BWI76_RS04035 0.88 +0.1 835,020 + BWI76_RS04035 0.88 -0.3 835,020 + BWI76_RS04035 0.88 +0.9 835,020 + BWI76_RS04035 0.88 +0.1 835,020 + BWI76_RS04035 0.88 -0.0 835,020 + BWI76_RS04035 0.88 +0.1 835,020 + BWI76_RS04035 0.88 -0.5 835,028 - BWI76_RS04035 0.89 +0.5 835,028 - BWI76_RS04035 0.89 +1.0 835,028 - BWI76_RS04035 0.89 -0.4 835,028 - BWI76_RS04035 0.89 -1.1 835,028 - BWI76_RS04035 0.89 +0.5 835,028 - BWI76_RS04035 0.89 +0.5 835,028 - BWI76_RS04035 0.89 +0.0 835,063 + -0.4 835,070 - -1.2 835,072 + -0.3 835,078 + -1.0 835,080 + -2.9 835,080 + +0.1 835,080 + -0.3 835,087 + +0.2 835,087 + -1.5 835,087 + -0.8 835,088 - +0.6 835,090 + -0.1 835,095 + -0.3 835,095 - -0.5 835,095 - +0.1 835,095 - -0.8 835,098 - +2.5 835,100 + +3.0 835,100 - -1.6 835,100 - +0.2 835,100 - -0.7 835,100 - +0.1 835,101 + -0.7 835,103 + -0.3 835,129 + -0.4 835,133 - -0.6 835,139 + -0.6 835,142 + -0.6 835,150 - +1.4 835,166 + BWI76_RS04040 0.11 +0.7 835,174 - BWI76_RS04040 0.13 -0.5 835,174 - BWI76_RS04040 0.13 -0.4 835,207 - BWI76_RS04040 0.20 +0.1 835,207 - BWI76_RS04040 0.20 +0.1 835,212 + BWI76_RS04040 0.21 +0.2 835,219 - BWI76_RS04040 0.23 -1.7 835,220 - BWI76_RS04040 0.23 +1.0 835,224 + BWI76_RS04040 0.24 +0.0 835,232 - BWI76_RS04040 0.26 -0.5 835,246 - BWI76_RS04040 0.29 -1.6 835,274 - BWI76_RS04040 0.35 -0.9 835,282 - BWI76_RS04040 0.37 +0.5 835,286 + BWI76_RS04040 0.37 -1.4 835,453 + BWI76_RS04040 0.74 -0.5 835,482 + BWI76_RS04040 0.80 -0.7 835,482 + BWI76_RS04040 0.80 +4.0 835,490 - BWI76_RS04040 0.82 -0.2 835,493 + BWI76_RS04040 0.83 +0.4 835,493 + BWI76_RS04040 0.83 -0.6 835,493 + BWI76_RS04040 0.83 +1.5 835,501 - BWI76_RS04040 0.84 +1.8 835,506 - BWI76_RS04040 0.85 +0.3 835,529 + -0.4 835,569 - +0.2 835,569 - -0.6 835,584 + +1.4 835,592 - -0.3 835,784 + +0.2 835,897 - -1.1 835,897 - +1.4 835,899 + -0.3 835,907 - -1.5 835,996 - +0.1 836,154 - BWI76_RS04045 0.18 -0.6 836,348 - BWI76_RS04045 0.32 -1.2 836,524 + BWI76_RS04045 0.45 -1.9 836,531 - BWI76_RS04045 0.46 -1.2 836,660 - BWI76_RS04045 0.56 -0.5 836,675 - BWI76_RS04045 0.57 +1.0 836,842 + BWI76_RS04045 0.69 -0.9 837,008 + BWI76_RS04045 0.81 -0.7 837,011 - BWI76_RS04045 0.82 -0.7 837,016 - BWI76_RS04045 0.82 -0.9 837,078 - BWI76_RS04045 0.87 +0.5 837,143 - -0.6 837,337 - +0.4 837,366 - -3.3 837,434 - BWI76_RS04050 0.16 -1.4 837,572 + BWI76_RS04050 0.34 -0.0 837,777 - -0.1 837,839 + BWI76_RS04050 0.68 -1.9 837,906 + BWI76_RS04050 0.76 +1.1 837,946 - BWI76_RS04050 0.81 -0.2 837,956 - BWI76_RS04050 0.83 +1.4 837,970 - BWI76_RS04050 0.84 -0.3 838,030 + -0.7 838,032 + -0.3 838,032 + -1.2 838,032 + -1.9 838,040 - -0.8
Or see this region's nucleotide sequence