Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03215 and BWI76_RS03220 are separated by 79 nucleotides BWI76_RS03220 and BWI76_RS03225 are separated by 429 nucleotides
BWI76_RS03215: BWI76_RS03215 - hypothetical protein, at 662,631 to 663,731
_RS03215
BWI76_RS03220: BWI76_RS03220 - hypothetical protein, at 663,811 to 664,334
_RS03220
BWI76_RS03225: BWI76_RS03225 - transcriptional regulator, at 664,764 to 665,570
_RS03225
Position (kb) 663
664
665 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 662.820 kb on - strand, within BWI76_RS03215 at 662.865 kb on - strand, within BWI76_RS03215 at 662.943 kb on + strand, within BWI76_RS03215 at 662.951 kb on - strand, within BWI76_RS03215 at 662.960 kb on + strand, within BWI76_RS03215 at 663.081 kb on - strand, within BWI76_RS03215 at 663.081 kb on - strand, within BWI76_RS03215 at 663.082 kb on - strand, within BWI76_RS03215 at 663.093 kb on - strand, within BWI76_RS03215 at 663.177 kb on + strand, within BWI76_RS03215 at 663.184 kb on + strand, within BWI76_RS03215 at 663.359 kb on + strand, within BWI76_RS03215 at 663.434 kb on + strand, within BWI76_RS03215 at 663.465 kb on - strand at 663.536 kb on + strand, within BWI76_RS03215 at 663.536 kb on + strand, within BWI76_RS03215 at 663.536 kb on + strand, within BWI76_RS03215 at 663.536 kb on + strand, within BWI76_RS03215 at 663.536 kb on + strand, within BWI76_RS03215 at 663.536 kb on + strand, within BWI76_RS03215 at 663.544 kb on - strand, within BWI76_RS03215 at 663.544 kb on - strand, within BWI76_RS03215 at 663.626 kb on + strand at 663.715 kb on + strand at 663.726 kb on + strand at 663.755 kb on - strand at 663.771 kb on + strand at 663.816 kb on - strand at 663.823 kb on + strand at 663.834 kb on - strand at 663.849 kb on + strand at 663.854 kb on + strand at 663.857 kb on - strand at 663.860 kb on + strand at 663.867 kb on + strand, within BWI76_RS03220 at 663.867 kb on + strand at 663.867 kb on - strand, within BWI76_RS03220 at 663.867 kb on - strand, within BWI76_RS03220 at 663.867 kb on - strand, within BWI76_RS03220 at 663.875 kb on - strand, within BWI76_RS03220 at 663.875 kb on - strand, within BWI76_RS03220 at 663.875 kb on - strand, within BWI76_RS03220 at 663.876 kb on - strand, within BWI76_RS03220 at 663.876 kb on - strand, within BWI76_RS03220 at 663.928 kb on + strand, within BWI76_RS03220 at 663.936 kb on - strand, within BWI76_RS03220 at 663.962 kb on - strand, within BWI76_RS03220 at 663.970 kb on - strand, within BWI76_RS03220 at 663.972 kb on - strand, within BWI76_RS03220 at 664.033 kb on + strand, within BWI76_RS03220 at 664.033 kb on + strand, within BWI76_RS03220 at 664.043 kb on - strand, within BWI76_RS03220 at 664.087 kb on + strand, within BWI76_RS03220 at 664.087 kb on + strand, within BWI76_RS03220 at 664.102 kb on + strand, within BWI76_RS03220 at 664.107 kb on - strand, within BWI76_RS03220 at 664.112 kb on + strand, within BWI76_RS03220 at 664.120 kb on + strand, within BWI76_RS03220 at 664.120 kb on - strand, within BWI76_RS03220 at 664.121 kb on + strand, within BWI76_RS03220 at 664.128 kb on - strand, within BWI76_RS03220 at 664.129 kb on - strand, within BWI76_RS03220 at 664.129 kb on - strand, within BWI76_RS03220 at 664.131 kb on + strand, within BWI76_RS03220 at 664.139 kb on - strand, within BWI76_RS03220 at 664.139 kb on - strand, within BWI76_RS03220 at 664.141 kb on + strand, within BWI76_RS03220 at 664.168 kb on - strand, within BWI76_RS03220 at 664.168 kb on - strand, within BWI76_RS03220 at 664.177 kb on + strand, within BWI76_RS03220 at 664.177 kb on + strand, within BWI76_RS03220 at 664.184 kb on + strand, within BWI76_RS03220 at 664.184 kb on + strand, within BWI76_RS03220 at 664.184 kb on + strand, within BWI76_RS03220 at 664.192 kb on - strand, within BWI76_RS03220 at 664.192 kb on - strand, within BWI76_RS03220 at 664.192 kb on - strand, within BWI76_RS03220 at 664.192 kb on - strand, within BWI76_RS03220 at 664.231 kb on - strand, within BWI76_RS03220 at 664.247 kb on + strand, within BWI76_RS03220 at 664.252 kb on - strand, within BWI76_RS03220 at 664.255 kb on - strand, within BWI76_RS03220 at 664.255 kb on - strand, within BWI76_RS03220 at 664.273 kb on + strand, within BWI76_RS03220 at 664.277 kb on - strand, within BWI76_RS03220 at 664.277 kb on - strand, within BWI76_RS03220 at 664.279 kb on + strand, within BWI76_RS03220 at 664.282 kb on - strand at 664.291 kb on - strand at 664.293 kb on - strand at 664.293 kb on - strand at 664.293 kb on - strand at 664.306 kb on - strand at 664.341 kb on + strand at 664.341 kb on + strand at 664.342 kb on + strand at 664.348 kb on + strand at 664.348 kb on + strand at 664.348 kb on + strand at 664.348 kb on - strand at 664.348 kb on - strand at 664.349 kb on - strand at 664.349 kb on - strand at 664.350 kb on - strand at 664.356 kb on + strand at 664.356 kb on - strand at 664.357 kb on - strand at 664.364 kb on - strand at 664.364 kb on - strand at 664.370 kb on + strand at 664.370 kb on - strand at 664.372 kb on + strand at 664.372 kb on + strand at 664.372 kb on + strand at 664.372 kb on + strand at 664.372 kb on + strand at 664.372 kb on + strand at 664.380 kb on - strand at 664.380 kb on - strand at 664.380 kb on - strand at 664.393 kb on + strand at 664.426 kb on + strand at 664.434 kb on - strand at 664.434 kb on - strand at 664.435 kb on - strand at 664.447 kb on + strand at 664.457 kb on + strand at 664.457 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.462 kb on + strand at 664.464 kb on + strand at 664.464 kb on + strand at 664.464 kb on + strand at 664.464 kb on + strand at 664.465 kb on - strand at 664.465 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.470 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.472 kb on - strand at 664.478 kb on - strand at 664.478 kb on - strand at 664.478 kb on - strand at 664.478 kb on - strand at 664.478 kb on - strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.480 kb on + strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.488 kb on - strand at 664.497 kb on + strand at 664.505 kb on - strand at 664.507 kb on - strand at 664.507 kb on - strand at 664.520 kb on + strand at 664.530 kb on + strand at 664.533 kb on - strand at 664.538 kb on - strand at 664.538 kb on - strand at 664.538 kb on - strand at 664.555 kb on + strand at 664.555 kb on + strand at 664.563 kb on + strand at 664.563 kb on + strand at 664.566 kb on - strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.570 kb on + strand at 664.572 kb on + strand at 664.572 kb on + strand at 664.578 kb on + strand at 664.578 kb on + strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.578 kb on - strand at 664.580 kb on + strand at 664.580 kb on + strand at 664.588 kb on - strand at 664.588 kb on - strand at 664.588 kb on - strand at 664.588 kb on - strand at 664.588 kb on - strand at 664.590 kb on + strand at 664.593 kb on - strand at 664.601 kb on + strand at 664.601 kb on + strand at 664.602 kb on + strand at 664.602 kb on + strand at 664.607 kb on + strand at 664.608 kb on + strand at 664.609 kb on + strand at 664.609 kb on + strand at 664.609 kb on - strand at 664.609 kb on - strand at 664.609 kb on - strand at 664.610 kb on - strand at 664.610 kb on - strand at 664.611 kb on - strand at 664.615 kb on - strand at 664.616 kb on - strand at 664.616 kb on - strand at 664.617 kb on - strand at 664.617 kb on - strand at 664.617 kb on - strand at 664.617 kb on - strand at 664.617 kb on - strand at 664.627 kb on - strand at 664.649 kb on + strand at 664.649 kb on + strand at 664.658 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.660 kb on + strand at 664.666 kb on + strand at 664.668 kb on + strand at 664.668 kb on + strand at 664.668 kb on + strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.668 kb on - strand at 664.671 kb on + strand at 664.679 kb on - strand at 664.679 kb on - strand at 664.681 kb on + strand at 664.690 kb on + strand at 664.696 kb on - strand at 664.700 kb on + strand at 664.719 kb on + strand at 664.738 kb on + strand at 664.738 kb on + strand at 664.748 kb on - strand at 664.748 kb on - strand at 664.793 kb on - strand at 664.795 kb on + strand at 664.798 kb on - strand at 664.820 kb on + strand at 664.836 kb on - strand at 665.006 kb on - strand, within BWI76_RS03225 at 665.091 kb on + strand, within BWI76_RS03225 at 665.100 kb on + strand, within BWI76_RS03225 at 665.100 kb on + strand, within BWI76_RS03225 at 665.108 kb on - strand at 665.108 kb on - strand, within BWI76_RS03225 at 665.130 kb on - strand, within BWI76_RS03225 at 665.130 kb on - strand, within BWI76_RS03225 at 665.155 kb on - strand, within BWI76_RS03225 at 665.155 kb on - strand, within BWI76_RS03225 at 665.155 kb on - strand, within BWI76_RS03225 at 665.155 kb on - strand, within BWI76_RS03225 at 665.158 kb on + strand, within BWI76_RS03225 at 665.190 kb on - strand, within BWI76_RS03225 at 665.261 kb on - strand, within BWI76_RS03225 at 665.261 kb on - strand, within BWI76_RS03225 at 665.275 kb on + strand, within BWI76_RS03225 at 665.279 kb on - strand, within BWI76_RS03225 at 665.307 kb on - strand, within BWI76_RS03225
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 662,820 - BWI76_RS03215 0.17 +4.4 662,865 - BWI76_RS03215 0.21 +0.3 662,943 + BWI76_RS03215 0.28 +0.8 662,951 - BWI76_RS03215 0.29 +0.1 662,960 + BWI76_RS03215 0.30 -0.2 663,081 - BWI76_RS03215 0.41 -2.2 663,081 - BWI76_RS03215 0.41 -1.7 663,082 - BWI76_RS03215 0.41 +0.0 663,093 - BWI76_RS03215 0.42 -0.8 663,177 + BWI76_RS03215 0.50 -0.1 663,184 + BWI76_RS03215 0.50 +0.7 663,359 + BWI76_RS03215 0.66 -0.4 663,434 + BWI76_RS03215 0.73 -0.8 663,465 - +1.7 663,536 + BWI76_RS03215 0.82 -0.0 663,536 + BWI76_RS03215 0.82 +0.5 663,536 + BWI76_RS03215 0.82 -0.2 663,536 + BWI76_RS03215 0.82 +1.7 663,536 + BWI76_RS03215 0.82 -2.0 663,536 + BWI76_RS03215 0.82 +1.5 663,544 - BWI76_RS03215 0.83 +0.6 663,544 - BWI76_RS03215 0.83 -1.4 663,626 + -0.8 663,715 + -0.1 663,726 + -1.4 663,755 - +0.3 663,771 + -1.5 663,816 - -0.7 663,823 + -0.7 663,834 - +0.4 663,849 + -1.5 663,854 + +1.7 663,857 - -0.3 663,860 + +0.4 663,867 + BWI76_RS03220 0.11 +0.2 663,867 + +2.2 663,867 - BWI76_RS03220 0.11 -0.6 663,867 - BWI76_RS03220 0.11 +0.2 663,867 - BWI76_RS03220 0.11 +1.3 663,875 - BWI76_RS03220 0.12 +0.7 663,875 - BWI76_RS03220 0.12 -0.7 663,875 - BWI76_RS03220 0.12 +0.5 663,876 - BWI76_RS03220 0.12 +0.7 663,876 - BWI76_RS03220 0.12 +2.8 663,928 + BWI76_RS03220 0.22 +0.3 663,936 - BWI76_RS03220 0.24 -0.1 663,962 - BWI76_RS03220 0.29 +5.0 663,970 - BWI76_RS03220 0.30 -0.3 663,972 - BWI76_RS03220 0.31 -1.3 664,033 + BWI76_RS03220 0.42 +2.8 664,033 + BWI76_RS03220 0.42 -1.2 664,043 - BWI76_RS03220 0.44 +0.9 664,087 + BWI76_RS03220 0.53 -1.6 664,087 + BWI76_RS03220 0.53 +0.3 664,102 + BWI76_RS03220 0.56 -0.3 664,107 - BWI76_RS03220 0.56 +0.0 664,112 + BWI76_RS03220 0.57 +0.6 664,120 + BWI76_RS03220 0.59 +0.1 664,120 - BWI76_RS03220 0.59 -0.6 664,121 + BWI76_RS03220 0.59 +0.6 664,128 - BWI76_RS03220 0.60 +0.1 664,129 - BWI76_RS03220 0.61 -0.9 664,129 - BWI76_RS03220 0.61 -0.4 664,131 + BWI76_RS03220 0.61 +0.8 664,139 - BWI76_RS03220 0.63 -0.1 664,139 - BWI76_RS03220 0.63 -0.4 664,141 + BWI76_RS03220 0.63 +1.2 664,168 - BWI76_RS03220 0.68 -0.0 664,168 - BWI76_RS03220 0.68 -0.7 664,177 + BWI76_RS03220 0.70 -0.4 664,177 + BWI76_RS03220 0.70 +2.0 664,184 + BWI76_RS03220 0.71 +1.3 664,184 + BWI76_RS03220 0.71 +0.8 664,184 + BWI76_RS03220 0.71 -1.0 664,192 - BWI76_RS03220 0.73 +1.0 664,192 - BWI76_RS03220 0.73 +0.6 664,192 - BWI76_RS03220 0.73 +0.3 664,192 - BWI76_RS03220 0.73 -1.4 664,231 - BWI76_RS03220 0.80 -0.9 664,247 + BWI76_RS03220 0.83 -2.2 664,252 - BWI76_RS03220 0.84 +0.2 664,255 - BWI76_RS03220 0.85 -0.2 664,255 - BWI76_RS03220 0.85 -0.3 664,273 + BWI76_RS03220 0.88 -0.1 664,277 - BWI76_RS03220 0.89 -0.2 664,277 - BWI76_RS03220 0.89 +1.2 664,279 + BWI76_RS03220 0.89 -1.5 664,282 - +0.2 664,291 - +0.2 664,293 - -0.1 664,293 - +0.9 664,293 - -0.7 664,306 - -1.0 664,341 + +1.2 664,341 + +0.2 664,342 + +0.1 664,348 + -0.4 664,348 + -0.6 664,348 + +2.2 664,348 - -1.0 664,348 - +0.6 664,349 - -0.4 664,349 - +0.2 664,350 - -0.1 664,356 + -1.1 664,356 - +1.1 664,357 - +0.3 664,364 - +0.3 664,364 - -0.9 664,370 + -1.0 664,370 - +0.0 664,372 + -0.2 664,372 + +0.8 664,372 + -0.3 664,372 + -0.3 664,372 + +0.1 664,372 + +1.8 664,380 - -2.0 664,380 - +0.3 664,380 - -0.4 664,393 + -0.1 664,426 + -1.3 664,434 - +1.1 664,434 - +0.1 664,435 - +0.0 664,447 + +0.3 664,457 + -0.3 664,457 + +0.0 664,462 + +0.6 664,462 + +1.6 664,462 + -1.4 664,462 + +0.0 664,462 + -0.7 664,462 + +0.1 664,462 + +0.4 664,462 + +1.2 664,462 + -0.1 664,462 + +0.1 664,462 + -1.4 664,462 + -0.6 664,462 + +0.7 664,462 + -0.1 664,462 + +0.5 664,462 + -0.9 664,462 + -0.5 664,462 + +0.9 664,462 + +0.3 664,462 + +1.2 664,464 + -0.7 664,464 + -0.1 664,464 + +0.2 664,464 + -0.3 664,465 - +0.6 664,465 - -0.8 664,470 - -0.2 664,470 - +0.4 664,470 - +0.5 664,470 - +0.2 664,470 - +0.1 664,470 - -0.3 664,470 - +0.7 664,470 - +0.8 664,470 - -0.5 664,470 - +1.8 664,470 - -1.1 664,470 - -0.4 664,470 - -0.5 664,470 - -0.4 664,470 - +0.5 664,470 - +0.3 664,470 - +0.2 664,470 - -0.5 664,470 - -0.3 664,470 - -1.2 664,470 - +0.0 664,470 - -0.3 664,470 - -2.2 664,470 - -0.4 664,470 - -0.4 664,470 - +0.2 664,472 - +0.2 664,472 - -0.5 664,472 - -0.5 664,472 - +0.5 664,472 - -0.0 664,472 - +0.6 664,472 - +0.4 664,472 - +1.2 664,472 - +0.0 664,472 - -0.7 664,472 - -1.2 664,478 - -2.6 664,478 - +0.2 664,478 - +0.5 664,478 - -0.2 664,478 - -1.1 664,480 + -1.4 664,480 + +1.3 664,480 + -0.5 664,480 + -0.0 664,480 + +0.4 664,480 + +0.4 664,480 + -0.4 664,480 + -1.8 664,480 + -1.1 664,480 + +2.6 664,480 + +1.6 664,480 + +0.2 664,488 - +0.6 664,488 - -0.9 664,488 - -1.6 664,488 - -0.2 664,488 - +1.7 664,488 - -1.0 664,488 - +0.6 664,488 - +1.7 664,488 - -0.1 664,488 - -0.3 664,488 - +0.6 664,488 - -0.3 664,488 - +0.4 664,488 - +0.3 664,488 - -1.0 664,488 - +0.4 664,488 - -0.1 664,488 - +3.1 664,488 - -0.3 664,488 - -0.5 664,488 - -0.2 664,488 - -3.0 664,488 - -1.3 664,488 - -1.4 664,488 - -0.3 664,488 - +1.4 664,488 - +2.7 664,488 - +1.0 664,488 - +1.3 664,488 - +0.6 664,488 - -2.0 664,497 + +2.6 664,505 - +1.2 664,507 - +1.4 664,507 - -0.4 664,520 + -0.2 664,530 + -0.8 664,533 - 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BWI76_RS03225 0.48 -1.1 665,155 - BWI76_RS03225 0.48 -1.0 665,155 - BWI76_RS03225 0.48 -2.6 665,155 - BWI76_RS03225 0.48 +0.4 665,158 + BWI76_RS03225 0.49 -0.7 665,190 - BWI76_RS03225 0.53 +0.7 665,261 - BWI76_RS03225 0.62 -0.1 665,261 - BWI76_RS03225 0.62 +0.2 665,275 + BWI76_RS03225 0.63 -1.6 665,279 - BWI76_RS03225 0.64 +1.2 665,307 - BWI76_RS03225 0.67 +2.2
Or see this region's nucleotide sequence