Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01700 and BWI76_RS01705 are separated by 236 nucleotides BWI76_RS01705 and BWI76_RS01710 overlap by 1 nucleotides BWI76_RS01710 and BWI76_RS01715 are separated by 31 nucleotides BWI76_RS01715 and BWI76_RS01720 overlap by 8 nucleotides
BWI76_RS01700: BWI76_RS01700 - dipeptidase E, at 350,137 to 350,826
_RS01700
BWI76_RS01705: BWI76_RS01705 - CcdB antidote CcdA, at 351,063 to 351,356
_RS01705
BWI76_RS01710: BWI76_RS01710 - DNA gyrase inhibitor, at 351,356 to 351,673
_RS01710
BWI76_RS01715: BWI76_RS01715 - shikimate 5-dehydrogenase, at 351,705 to 352,514
_RS01715
BWI76_RS01720: BWI76_RS01720 - L-sorbose 1-phosphate reductase (EC 1.1.1.-) <small>(from data)</small>, at 352,507 to 353,736
_RS01720
Position (kb) 351
352 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 350.457 kb on - strand, within BWI76_RS01700 at 350.457 kb on - strand, within BWI76_RS01700 at 350.722 kb on - strand, within BWI76_RS01700 at 350.780 kb on - strand at 350.908 kb on - strand at 350.909 kb on + strand at 350.922 kb on - strand at 350.922 kb on - strand at 350.963 kb on - strand at 351.034 kb on - strand at 351.258 kb on + strand, within BWI76_RS01705 at 351.310 kb on + strand, within BWI76_RS01705 at 351.443 kb on + strand, within BWI76_RS01710 at 351.458 kb on - strand, within BWI76_RS01710 at 351.622 kb on + strand, within BWI76_RS01710 at 351.622 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.627 kb on + strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.630 kb on - strand, within BWI76_RS01710 at 351.635 kb on - strand, within BWI76_RS01710 at 351.682 kb on + strand at 351.682 kb on + strand at 351.690 kb on - strand at 351.722 kb on - strand at 351.777 kb on + strand at 351.834 kb on + strand, within BWI76_RS01715 at 351.988 kb on - strand, within BWI76_RS01715 at 351.999 kb on - strand, within BWI76_RS01715 at 352.145 kb on - strand, within BWI76_RS01715 at 352.218 kb on - strand, within BWI76_RS01715 at 352.249 kb on + strand, within BWI76_RS01715 at 352.280 kb on + strand, within BWI76_RS01715 at 352.309 kb on - strand, within BWI76_RS01715 at 352.346 kb on - strand, within BWI76_RS01715 at 352.391 kb on - strand, within BWI76_RS01715 at 352.392 kb on + strand, within BWI76_RS01715 at 352.416 kb on - strand, within BWI76_RS01715 at 352.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 350,457 - BWI76_RS01700 0.46 +0.3 350,457 - BWI76_RS01700 0.46 -0.7 350,722 - BWI76_RS01700 0.85 +0.6 350,780 - +0.5 350,908 - +4.2 350,909 + -0.4 350,922 - +0.5 350,922 - -0.2 350,963 - -1.6 351,034 - -0.4 351,258 + BWI76_RS01705 0.66 +0.4 351,310 + BWI76_RS01705 0.84 -0.3 351,443 + BWI76_RS01710 0.27 -0.4 351,458 - BWI76_RS01710 0.32 -0.7 351,622 + BWI76_RS01710 0.84 -0.9 351,622 + BWI76_RS01710 0.84 +0.2 351,627 + BWI76_RS01710 0.85 -0.2 351,627 + BWI76_RS01710 0.85 -0.2 351,627 + BWI76_RS01710 0.85 -0.5 351,630 - BWI76_RS01710 0.86 -0.7 351,630 - BWI76_RS01710 0.86 -1.7 351,630 - BWI76_RS01710 0.86 -1.9 351,635 - BWI76_RS01710 0.88 +0.0 351,682 + +1.5 351,682 + -0.4 351,690 - -0.0 351,722 - +0.6 351,777 + -1.2 351,834 + BWI76_RS01715 0.16 +0.5 351,988 - BWI76_RS01715 0.35 -0.2 351,999 - BWI76_RS01715 0.36 +2.5 352,145 - BWI76_RS01715 0.54 -0.9 352,218 - BWI76_RS01715 0.63 -1.8 352,249 + BWI76_RS01715 0.67 +0.5 352,280 + BWI76_RS01715 0.71 -0.5 352,309 - BWI76_RS01715 0.75 +0.3 352,346 - BWI76_RS01715 0.79 -0.6 352,391 - BWI76_RS01715 0.85 -0.4 352,392 + BWI76_RS01715 0.85 -0.5 352,416 - BWI76_RS01715 0.88 +0.5 352,486 + -0.2
Or see this region's nucleotide sequence