Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24730 and BWI76_RS24735 are separated by 482 nucleotides BWI76_RS24735 and BWI76_RS24740 are separated by 127 nucleotides
BWI76_RS24730: BWI76_RS24730 - uronate isomerase, at 5,157,505 to 5,158,917
_RS24730
BWI76_RS24735: BWI76_RS24735 - MFS transporter, at 5,159,400 to 5,160,701
_RS24735
BWI76_RS24740: BWI76_RS24740 - GntR family transcriptional regulator, at 5,160,829 to 5,161,605
_RS24740
Position (kb) 5159
5160
5161 Strain fitness (log2 ratio) -1
0
1
2
3 at 5158.939 kb on + strand at 5159.208 kb on + strand at 5159.314 kb on - strand at 5159.474 kb on + strand at 5159.482 kb on - strand at 5159.566 kb on - strand, within BWI76_RS24735 at 5159.575 kb on + strand, within BWI76_RS24735 at 5159.585 kb on + strand, within BWI76_RS24735 at 5159.663 kb on - strand, within BWI76_RS24735 at 5160.168 kb on + strand, within BWI76_RS24735 at 5160.175 kb on + strand, within BWI76_RS24735 at 5160.183 kb on - strand, within BWI76_RS24735 at 5160.251 kb on - strand, within BWI76_RS24735 at 5160.285 kb on - strand, within BWI76_RS24735 at 5160.291 kb on - strand, within BWI76_RS24735 at 5160.291 kb on - strand, within BWI76_RS24735 at 5160.350 kb on - strand, within BWI76_RS24735 at 5160.387 kb on + strand, within BWI76_RS24735 at 5160.659 kb on + strand at 5160.944 kb on - strand, within BWI76_RS24740 at 5161.454 kb on + strand, within BWI76_RS24740 at 5161.472 kb on - strand, within BWI76_RS24740 at 5161.621 kb on - strand at 5161.652 kb on - strand at 5161.678 kb on + strand at 5161.688 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 5,158,939 + +0.2 5,159,208 + +0.3 5,159,314 - -0.3 5,159,474 + +0.4 5,159,482 - -0.7 5,159,566 - BWI76_RS24735 0.13 +0.1 5,159,575 + BWI76_RS24735 0.13 +0.6 5,159,585 + BWI76_RS24735 0.14 -0.3 5,159,663 - BWI76_RS24735 0.20 -1.0 5,160,168 + BWI76_RS24735 0.59 +0.5 5,160,175 + BWI76_RS24735 0.60 +1.8 5,160,183 - BWI76_RS24735 0.60 +0.9 5,160,251 - BWI76_RS24735 0.65 +0.9 5,160,285 - BWI76_RS24735 0.68 +3.0 5,160,291 - BWI76_RS24735 0.68 +1.4 5,160,291 - BWI76_RS24735 0.68 +0.1 5,160,350 - BWI76_RS24735 0.73 +0.3 5,160,387 + BWI76_RS24735 0.76 +0.2 5,160,659 + +0.2 5,160,944 - BWI76_RS24740 0.15 -0.5 5,161,454 + BWI76_RS24740 0.80 -0.3 5,161,472 - BWI76_RS24740 0.83 -1.3 5,161,621 - -0.8 5,161,652 - -0.7 5,161,678 + +0.6 5,161,688 + +0.6
Or see this region's nucleotide sequence